[ome-users] Big problems with OMERO.importer on Mac OSx

[Paulo Almeida]

Hi Ruben,

For what it's worth, I can connect to the server with Omero.importer (latest 
versions of both), on OSX (Tiger). It might be a firewall issue on the client 
side, but it seems weird that Insight would work and Importer not.

- Paulo 

On Monday 12 May 2008 11:12, » Ruben Alves wrote:
> Hi everyone,
> I'm a fresh new user of OMERO (maybe one month), and i've build a fresh
> new Linux Server with OMERO here at IMM.
> Everything is working fine in every aspect. But, recently one of the
> project manager whanted to try it, but he just can't connect to OMERO on
> is MacOSx. But he only can't connect on the OMERO.importer, because the
> OMERO.insight is currently working perfectly in Windows , Linux and of
> course Mac.
> I've exported the error log. It's important to know, at the connection
> time, my firewall was off (iptables -F | iptables -X). And at the same
> time (with 1 or 2 minutes difference), another connection was
> established with a Windows client AND a Linux (ubuntu) client. The
> windows client was on the network, and the ubuntu client was on a
> Virtual Machine.
>
> I Really hope someone had this kind of bad experience. I've spent so
> many hours on that, and now i can't get a neutral view of the problematic.
>
> Best regards,
>
> // Ruben
> ps: actually, on the log "ruben" is the login and "10.20.20.52" is the
> server ip address.
>
> 0          [  Thread-5] DEBUG            ome.formats.OMEROMetadataStore
> - Initializing store: ruben/<3chars> 10.20.20.52:1099
> 1013       [  Thread-5] INFO          ome.formats.importer.LoginHandler
> - java.lang.Exception:
> org.springframework.jndi.JndiLookupFailureException:
> JndiObjectTargetSource failed to obtain new target object; nested
> exception is javax.naming.CommunicationException [Root exception is
> java.rmi.ConnectException: Connection refused to host: ubuntu.fm.ul.pt;
> nested exception is:
>    java.net.ConnectException: Connection refused]
>    at ome.formats.OMEROMetadataStore.<init>(OMEROMetadataStore.java:152)
>    at ome.formats.importer.LoginHandler.isValidLogin(LoginHandler.java:227)
>    at ome.formats.importer.LoginHandler.access$10(LoginHandler.java:223)
>    at ome.formats.importer.LoginHandler$1.run(LoginHandler.java:137)
> Caused by: org.springframework.jndi.JndiLookupFailureException:
> JndiObjectTargetSource failed to obtain new target object; nested
> exception is javax.naming.CommunicationException [Root exception is
> java.rmi.ConnectException: Connection refused to host: ubuntu.fm.ul.pt;
> nested exception is:
>    java.net.ConnectException: Connection refused]
>    at
> org.springframework.jndi.JndiObjectTargetSource.getTarget(JndiObjectTargetS
>ource.java:138)
>
>    at ome.client.JBossTargetSource.getTarget(JBossTargetSource.java:73)
>    at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
>oxy.java:184)
>
>    at $Proxy6.findByString(Unknown Source)
>    at ome.formats.OMEROMetadataStore.<init>(OMEROMetadataStore.java:149)
>    ... 3 more
> Caused by: javax.naming.CommunicationException [Root exception is
> java.rmi.ConnectException: Connection refused to host: ubuntu.fm.ul.pt;
> nested exception is:
>    java.net.ConnectException: Connection refused]
>    at org.jnp.interfaces.NamingContext.lookup(NamingContext.java:724)
>    at org.jnp.interfaces.NamingContext.lookup(NamingContext.java:589)
>    at javax.naming.InitialContext.lookup(InitialContext.java:351)
>    at
> org.springframework.jndi.JndiTemplate$1.doInContext(JndiTemplate.java:123)
>    at org.springframework.jndi.JndiTemplate.execute(JndiTemplate.java:85)
>    at org.springframework.jndi.JndiTemplate.lookup(JndiTemplate.java:121)
>    at org.springframework.jndi.JndiTemplate.lookup(JndiTemplate.java:146)
>    at
> org.springframework.jndi.JndiLocatorSupport.lookup(JndiLocatorSupport.java:
>93)
>
>    at
> org.springframework.jndi.JndiObjectLocator.lookup(JndiObjectLocator.java:10
>5)
>
>    at
> org.springframework.jndi.JndiObjectTargetSource.getTarget(JndiObjectTargetS
>ource.java:131)
>
>    ... 7 more
> Caused by: java.rmi.ConnectException: Connection refused to host:
> ubuntu.fm.ul.pt; nested exception is:
>    java.net.ConnectException: Connection refused
>    at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:574)
>    at
> sun.rmi.transport.tcp.TCPChannel.createConnection(TCPChannel.java:185)
>    at sun.rmi.transport.tcp.TCPChannel.newConnection(TCPChannel.java:171)
>    at sun.rmi.server.UnicastRef.invoke(UnicastRef.java:94)
>    at org.jnp.server.NamingServer_Stub.lookup(Unknown Source)
>    at org.jnp.interfaces.NamingContext.lookup(NamingContext.java:627)
>    ... 16 more
> Caused by: java.net.ConnectException: Connection refused
>    at java.net.PlainSocketImpl.socketConnect(Native Method)
>    at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
>    at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
>    at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
>    at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:430)
>    at java.net.Socket.connect(Socket.java:520)
>    at java.net.Socket.connect(Socket.java:470)
>    at java.net.Socket.<init>(Socket.java:367)
>    at java.net.Socket.<init>(Socket.java:180)
>    at
> sun.rmi.transport.proxy.RMIDirectSocketFactory.createSocket(RMIDirectSocket
>Factory.java:22)
>
>    at
> sun.rmi.transport.proxy.RMIMasterSocketFactory.createSocket(RMIMasterSocket
>Factory.java:128)
>
>    at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:569)
>    ... 21 more