[ome-users] Help with OME installation on Fedora Core 6, (mod_perl not configured error...)

Ilya Goldberg igg at nih.gov
Thu Jan 24 17:57:22 GMT 2008 

No problem - glad to hear its working now.
Probably should add an item about proxies to the FAQ.

I'm cc'ing the users list for now so at least there's some record of  
the resolution.
For the record, check any proxy/cache settings so that requests go  
directly to the OME server.

-Ilya

On Jan 24, 2008, at 11:59 AM, Jerome Avondo wrote:

>
> Success!
>
> Basically I had a network proxy defined, "wwwcache.bbsrc.ac.uk"  
> which was what was blocking the test script...
> Anyways removed that from my settings, and the installation worked  
> no problem.
>
> Had to start the posgresql db manually as explained in the FAQ, but  
> that was easy...
> So OME server is now up and running...
>
> thank you so much for your time,
>
> j.
>
> ----------------------------------------
>> From: igg at nih.gov
>> Subject: Re: [ome-users] Help with OME installation on Fedora Core  
>> 6, (mod_perl not configured error...)
>> Date: Thu, 24 Jan 2008 10:39:14 -0500
>> To: jeromeavondo at msn.com
>>
>> There's a web cache installed somewhere that's intercepting the
>> requests.  The test script is written to the right place, but its not
>> registered in the web cache, so you get an error.  Eventually it
>> makes it into the cache, so you can access the script manually.
>>
>> I've never used a web cache in front of OME.  It might be a bad idea
>> since all of the web content is generated dynamically.
>>
>> This error text indicates there's a cache somewhere:
>>
>>>>>>> The system returned:
>>>>>>>     (111) Connection refused
>>>>>>>
>>>>>>>
>>>>>>> The remote host or network may be down.  Please try the request
>>>>>>> again.
>>>>>>> Your cache administrator is webmstr at bbsrc.ac.uk.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Generated Mon, 21 Jan 2008 16:13:28 GMT by BBSRC-wwwcache- 
>>>>>>> service
>>>>>>> (squid/2.5.STABLE9)
>>>>>>>
>>
>> What is BBSRC-wwwcache-service ?
>>
>> I can't figure out from your httpd.conf how this cache gets
>> interposed when making requests to "localhost".
>> It may be that localhost isn't mapping directly to the loopback
>> interface (127.0.0.1).  What are the contents of /etc/hosts?
>> Normally, it should be like this:
>> -----
>> # Do not remove the following line, or various programs
>> # that require network functionality will fail.
>> 127.0.0.1       localhost.localdomain   localhost
>> -----
>> There may be other lines in this file mapping other hosts to IP
>> addresses, but localhost and localhost.localdomain should appear in
>> the file exactly once, and only on a line beginning with
>> "127.0.0.1".  Normally, the computer's name - either fully qualified
>> with the domain or on its own - also appears on the "127.0.0.1" line.
>>
>> This may require help from your local network admin.  I don't have
>> much experience with web caches, and the fact that its interposed
>> somehow outside of Apache's configuration files is a little odd.
>>
>> Let me know if /etc/hosts checks out, or if you figure out how  
>> "BBSRC-
>> wwwcache-service" is getting into the loop.
>>
>> -Ilya
>>
>>
>>
>> On Jan 24, 2008, at 7:31 AM, Jerome Avondo wrote:
>>
>>>
>>> sry forgot to attach the files.....
>>>
>>> j.
>>>
>>> ----------------------------------------
>>>> CC: ome-users at lists.openmicroscopy.org.uk
>>>> From: igg at nih.gov
>>>> Subject: Re: [ome-users] Help with OME installation on Fedora Core
>>>> 6, (mod_perl not configured error...)
>>>> Date: Wed, 23 Jan 2008 12:25:18 -0500
>>>> To: jeromeavondo at msn.com
>>>>
>>>>
>>>> On Jan 23, 2008, at 4:41 AM, Jerome Avondo wrote:
>>>>
>>>>>
>>>>> hi,
>>>>>
>>>>> Thanks for the reply.
>>>>>
>>>>> I tried rerunnig the installation script, but it still produces  
>>>>> the
>>>>> same error. Im a bit stuck as out of ideas for what it could be...
>>>>> Ive copied the contents of my /var/tmp/ OME/install/
>>>>> ApacheConfigTask.log logfile at the end of this message. Had a  
>>>>> look
>>>>> at it but to be honest couldnt spot anything....
>>>>
>>>>
>>>> Nope nothing very informative there.  Your server is generating a
>>>> server error when running that script (response is not "200 OK").
>>>> If you paste that script (as it appears in the logfile) into a file
>>>> called /OME/perl2/mod_perl_test.pl, then go to
>>>>   http://localhost/perl2/mod_perl_test.pl
>>>> in a browser, then everything runs OK?
>>>> If so, potentially the OME user-agent (based on libcurl) is not
>>>> configured correctly, but that normally gives an entirely different
>>>> error earlier in the process.
>>>>
>>>> Perhaps there's something funky about your httpd.conf file?  Can  
>>>> you
>>>> send that to me as well as all the files in /OME/conf/ ?
>>>> Probably we should take this off-list.
>>>>
>>>> Sorry for your troubles.  Honestly, we have a dozen boxes  
>>>> running FC
>>>> 6 with nary a hiccup...
>>>> -I
>>>>
>>>>
>>>>>
>>>>> j.
>>>>>
>>>>> --------------------------------------
>>>>> ApacheConfigTask.log
>>>>> --------------------------------------
>>>>>
>>>>> Apache setup
>>>>> Apache binary: /usr/sbin/httpd
>>>>> apachectl binary: /usr/sbin/apachectl
>>>>> httpd root: /etc/httpd
>>>>> httpd conf: /etc/httpd/conf/httpd.conf
>>>>> httpd version: 2
>>>>> Apache configuration:
>>>>>         Configure Apache?: yes
>>>>>   Developer configuration: no
>>>>>           Server restart?: yes
>>>>> Install OME servers:
>>>>>            Images (omeis): yes
>>>>>              Data (omeds): yes
>>>>>                       Web: yes
>>>>> Apache directories:
>>>>>              httpd binary: /usr/sbin/httpd
>>>>>          apachectl binary: /usr/sbin/apachectl
>>>>>              DocumentRoot: /var/www/html
>>>>>                   cgi-bin: /var/www/cgi-bin
>>>>> Web-UI HTML Templates:
>>>>>   Developer configuration: no
>>>>> Configuring Apache
>>>>> httpd.conf is /etc/httpd/conf/httpd.conf
>>>>> Installing OMEIS
>>>>> Copying src/C/omeis/omeis to /var/www/cgi-bin/omeis
>>>>> chmod 0755 /var/www/cgi-bin/omeis
>>>>> chown /var/www/cgi-bin/omeis to uid: 48 gid: 501
>>>>> Set APACHE_OMEIS_INCLUDE to Include /OME/conf/httpd2.omeis.conf
>>>>> Forking a process to upgrade OMEIS
>>>>> Installing OMEDS
>>>>> Set APACHE_OMEDS_INCLUDE to Include /OME/conf/httpd2.omeds.conf
>>>>> Installing WEB
>>>>> Copying src/perl2/serve.pl to /OME/perl2/serve.pl
>>>>> chmod 0755 /OME/perl2/serve.pl
>>>>> chown /OME/perl2/serve.pl to uid: 48 gid: 501
>>>>> Copying src/html/index.html to /var/www/html/index.html
>>>>> chmod 0644 /var/www/html/index.html
>>>>> chmod 0644 /var/www/html/favicon.ico
>>>>> Set APACHE_WEB_INCLUDE to Include /OME/conf/httpd2.web.conf
>>>>> Installing DAE web by copying NonblockingSlaveWorkerCGI
>>>>> Copying src/perl2/OME/Analysis/Engine/NonblockingSlaveWorkerCGI.pl
>>>>> to /OME/perl2/NonblockingSlaveWorkerCGI.pl
>>>>> chmod 0755 /OME/perl2/NonblockingSlaveWorkerCGI.pl
>>>>> chown /OME/perl2/NonblockingSlaveWorkerCGI.pl to uid: 48 gid: 501
>>>>> Installing OME-startup.pl
>>>>> Copying src/perl2/OME-startup.pl to /OME/conf/OME-startup.pl
>>>>> chown /OME/conf/OME-startup.pl to uid: 48 gid: 501
>>>>> Fixing variables in conf/httpd.ome.*.conf
>>>>> Replacing %OME_DIST_BASE with /home/ut/Desktop/OME-2.6.1
>>>>> Replacing %OME_INSTALL_BASE with /OME
>>>>> Reading /OME/conf/httpd.ome.conf
>>>>> Writing /OME/conf/httpd.ome.conf
>>>>> Reading /OME/conf/httpd.omeds-dev.conf
>>>>> Writing /OME/conf/httpd.omeds-dev.conf
>>>>> Reading /OME/conf/httpd.omeds.conf
>>>>> Writing /OME/conf/httpd.omeds.conf
>>>>> Reading /OME/conf/httpd.omeis-dev.conf
>>>>> Writing /OME/conf/httpd.omeis-dev.conf
>>>>> Reading /OME/conf/httpd.omeis.conf
>>>>> Writing /OME/conf/httpd.omeis.conf
>>>>> Reading /OME/conf/httpd.web-dev.conf
>>>>> Writing /OME/conf/httpd.web-dev.conf
>>>>> Reading /OME/conf/httpd.web.conf
>>>>> Writing /OME/conf/httpd.web.conf
>>>>> Reading /OME/conf/httpd1.99.omeds-dev.conf
>>>>> Writing /OME/conf/httpd1.99.omeds-dev.conf
>>>>> Reading /OME/conf/httpd1.99.omeds.conf
>>>>> Writing /OME/conf/httpd1.99.omeds.conf
>>>>> Reading /OME/conf/httpd1.99.omeis-dev.conf
>>>>> Writing /OME/conf/httpd1.99.omeis-dev.conf
>>>>> Reading /OME/conf/httpd1.99.omeis.conf
>>>>> Writing /OME/conf/httpd1.99.omeis.conf
>>>>> Reading /OME/conf/httpd1.99.web-dev.conf
>>>>> Writing /OME/conf/httpd1.99.web-dev.conf
>>>>> Reading /OME/conf/httpd1.99.web.conf
>>>>> Writing /OME/conf/httpd1.99.web.conf
>>>>> Reading /OME/conf/httpd2.omeds-dev.conf
>>>>> Writing /OME/conf/httpd2.omeds-dev.conf
>>>>> Reading /OME/conf/httpd2.omeds.conf
>>>>> Writing /OME/conf/httpd2.omeds.conf
>>>>> Reading /OME/conf/httpd2.omeis-dev.conf
>>>>> Writing /OME/conf/httpd2.omeis-dev.conf
>>>>> Reading /OME/conf/httpd2.omeis.conf
>>>>> Writing /OME/conf/httpd2.omeis.conf
>>>>> Reading /OME/conf/httpd2.web-dev.conf
>>>>> Writing /OME/conf/httpd2.web-dev.conf
>>>>> Reading /OME/conf/httpd2.web.conf
>>>>> Writing /OME/conf/httpd2.web.conf
>>>>> Reading /OME/conf/httpd.ome.conf
>>>>> Writing /OME/conf/httpd.ome.conf
>>>>> Restarting Apache
>>>>> Executing /usr/sbin/apachectl restart
>>>>> Getting an OME::Util::cURL user agent
>>>>> Generated mod_perl test script:
>>>>> #!/usr/bin/perl -w
>>>>> use strict;
>>>>> use CGI qw/-no_xhtml/;
>>>>>
>>>>> my $CGI = CGI->new();
>>>>> print $CGI->header(-type => 'text/plain'),
>>>>>
>>>>>
>>>>> my ($key,$value);
>>>>> while ( ($key, $value) = each %ENV)
>>>>> {
>>>>>         print "$key = $value\n";
>>>>> }
>>>>>
>>>>>
>>>>> 1;
>>>>>
>>>>> Writing script to /OME/perl2/mod_perl_test.pl
>>>>> Getting response from http://localhost/perl2/mod_perl_test.pl
>>>>> Apache/mod_perl is not properly configured.  Did not get a  
>>>>> response
>>>>> from http://localhost/perl2/mod_perl_test.pl.
>>>>> ----------
>>>>>
>>>>>
>>>>> ----------------------------------------
>>>>>> CC: ome-users at lists.openmicroscopy.org.uk
>>>>>> From: igg at nih.gov
>>>>>> Subject: Re: [ome-users] Help with OME installation on Fedora  
>>>>>> Core
>>>>>> 6, (mod_perl not configured error...)
>>>>>> Date: Tue, 22 Jan 2008 13:10:45 -0500
>>>>>> To: jeromeavondo at msn.com
>>>>>>
>>>>>> Hi Jerome
>>>>>> Fedora Core 6 is a supported platform and we use it for both  
>>>>>> of our
>>>>>> production servers (lab and department).  OS X is mainly used for
>>>>>> development.
>>>>>> It would be informative to look at the logfile in  /var/tmp/OME/
>>>>>> install/ApacheConfigTask.log
>>>>>>
>>>>>> Although somehow, you were able to run this manually,
>>>>>> http://localhost/perl2/mod_perl_test.pl
>>>>>>
>>>>>> When the installation script tried to run it, it produced an  
>>>>>> error
>>>>>> (i.e. the server responded with something other than a 200  
>>>>>> response
>>>>>> code).  The logfile should have more details.
>>>>>> You might just try running the installer again - possibly there
>>>>>> were
>>>>>> some things that didn't "take" the first time.  The fact that you
>>>>>> were able to run the test script manually indicates that the  
>>>>>> system
>>>>>> was configured correctly.
>>>>>>
>>>>>> We've had very little trouble installing this on "stock" Fedora
>>>>>> Core
>>>>>> OSes.
>>>>>> If re-running the installer doesn't work, please send the /var/ 
>>>>>> tmp/
>>>>>> OME/install/ApacheConfigTask.log logfile.
>>>>>>
>>>>>> Also, you should change the server name to something other than
>>>>>> localhost.  This will cause your OME system to work only locally
>>>>>> (i.e. the images, etc will not appear on any other client).
>>>>>>
>>>>>> -Ilya
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Jan 22, 2008, at 5:12 AM, Jerome Avondo wrote:
>>>>>>
>>>>>>>
>>>>>>> hi,
>>>>>>>
>>>>>>> Dont know if this helps but tried running the following below
>>>>>>> manually, once apache is started, and the script "seems" to  
>>>>>>> work.
>>>>>>>
>>>>>>> http://localhost/perl2/mod_perl_test.pl
>>>>>>>
>>>>>>> I get the following output:
>>>>>>>
>>>>>>> ----------------------------------------------------------------
>>>>>>> SCRIPT_NAME = /perl2/mod_perl_test.pl
>>>>>>> SERVER_NAME = localhost
>>>>>>> SERVER_ADMIN = root at localhost
>>>>>>> HTTP_ACCEPT_ENCODING = gzip,deflate
>>>>>>> HTTP_CONNECTION = keep-alive
>>>>>>> REQUEST_METHOD = GET
>>>>>>> HTTP_ACCEPT = text/xml,application/xml,application/xhtml 
>>>>>>> +xml,text/
>>>>>>> html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5
>>>>>>> SCRIPT_FILENAME = /OME/perl2/mod_perl_test.pl
>>>>>>> SERVER_SOFTWARE = Apache/2.2.6 (Fedora)
>>>>>>> HTTP_ACCEPT_CHARSET = ISO-8859-1,utf-8;q=0.7,*;q=0.7
>>>>>>> QUERY_STRING =
>>>>>>> REMOTE_PORT = 59930
>>>>>>> HTTP_USER_AGENT = Mozilla/5.0 (X11; U; Linux i686; en-US; rv:
>>>>>>> 1.8.0.7) Gecko/20061011 Fedora/1.5.0.7-7.fc6 Firefox/1.5.0.7
>>>>>>> SERVER_PORT = 80
>>>>>>> SERVER_SIGNATURE = Apache/2.2.6 (Fedora) Server at localhost
>>>>>>> Port 80
>>>>>>>
>>>>>>> HTTP_ACCEPT_LANGUAGE = en-us,en;q=0.5
>>>>>>> REMOTE_ADDR = 127.0.0.1
>>>>>>> HTTP_KEEP_ALIVE = 300
>>>>>>> SERVER_PROTOCOL = HTTP/1.1
>>>>>>> PATH = /usr/bin/:/usr/local/bin/:/sw/bin/
>>>>>>> MOD_PERL_API_VERSION = 2
>>>>>>> REQUEST_URI = /perl2/mod_perl_test.pl
>>>>>>> GATEWAY_INTERFACE = CGI/1.1
>>>>>>> SERVER_ADDR = 127.0.0.1
>>>>>>> DOCUMENT_ROOT = /var/www/html
>>>>>>> HTTP_HOST = localhost
>>>>>>> MOD_PERL = mod_perl/2.0.2
>>>>>>> ----------------------------------------------------------------
>>>>>>>
>>>>>>> Also when I try and start/restart apache I get the following
>>>>>>> warning message:
>>>>>>> " [warn] The ScriptAlias directive in /OME/conf/ 
>>>>>>> httpd2.omeis.conf
>>>>>>> at line 2 will probably never match because it overlaps an  
>>>>>>> earlier
>>>>>>> ScriptAlias."
>>>>>>>
>>>>>>> Also found a previous OME-USERS thread with similar symptoms too
>>>>>>> but wasnt much help, as it seems the user was running an old
>>>>>>> install.pl script... http://lists.openmicroscopy.org.uk/ 
>>>>>>> pipermail/
>>>>>>> ome-users/2005-July/000068.html
>>>>>>>
>>>>>>> Well Im a bit stuck, if any expert has any suggestions/pointers,
>>>>>>> would be very greatful...
>>>>>>> Regards,
>>>>>>>
>>>>>>> J.
>>>>>>> ----------------------------------------
>>>>>>>> From: jeromeavondo at msn.com
>>>>>>>> To: ome-users at lists.openmicroscopy.org.uk
>>>>>>>> Date: Mon, 21 Jan 2008 16:32:19 +0000
>>>>>>>> Subject: Re: [ome-users] Help with OME installation on Fedora
>>>>>>>> Core
>>>>>>>> 6, (mod_perl not configured error...)
>>>>>>>>
>>>>>>>>
>>>>>>>> Hello,
>>>>>>>>
>>>>>>>> Been trying to get the OME server up and running on a fresh
>>>>>>>> Fedora
>>>>>>>> core 6 installation.
>>>>>>>> However I am having an error with the install.pl script at the
>>>>>>>> APACHE SETUP stage.
>>>>>>>>
>>>>>>>> You can find the complete install log at the end of this  
>>>>>>>> message.
>>>>>>>>
>>>>>>>> Basically it seems that its complaining about mod_perl not  
>>>>>>>> being
>>>>>>>> configured correctly.
>>>>>>>> The exact error message I get is: "Errors executing task:  
>>>>>>>> Apache/
>>>>>>>> mod_perl is not properly configured."
>>>>>>>>
>>>>>>>> when I run "yum list mod_perl" mod_perl is shown as  
>>>>>>>> installed and
>>>>>>>> the version number is 2.0.2-6.2.fc6
>>>>>>>>
>>>>>>>> Anybody have any suggestion about how to go about sorting this
>>>>>>>> problem? Do I have to do anything more to setup mod_perl
>>>>>>>> correctly?
>>>>>>>>
>>>>>>>> many thanks,
>>>>>>>>
>>>>>>>> j.
>>>>>>>>
>>>>>>>> --------------------------------------
>>>>>>>> COMPLETE INSTALL LOG:
>>>>>>>> --------------------------------------
>>>>>>>>
>>>>>>>> [root at JIC4367 OME-2.6.1]# perl install.pl
>>>>>>>> ------------------
>>>>>>>>  Pre-Installation
>>>>>>>> ------------------
>>>>>>>>
>>>>>>>> Term::ReadKey - Version 2.30
>>>>>>>> Storable - Version 2.15
>>>>>>>>
>>>>>>>> ----------------------------
>>>>>>>>  C Library Dependency Setup
>>>>>>>> ----------------------------
>>>>>>>>
>>>>>>>> (All verbose information logged in /var/tmp/ome-lib-check/
>>>>>>>> LibraryTask.log)
>>>>>>>>
>>>>>>>> Checking libraries
>>>>>>>>   \_ libssl 0.9.8 [OK].
>>>>>>>>   \_ libpng 1.2.10 [OK].
>>>>>>>>   \_ libjpeg 62 [OK].
>>>>>>>>   \_ libcurl 7.15.5 [OK].
>>>>>>>>   \_ libtiff 3.8.2 [OK].
>>>>>>>>   \_ zlib 1.2.3 [OK].
>>>>>>>>   \_ libdb_B-Tree 3 [OK].
>>>>>>>>   \_ libxml2 2.6.26 [OK].
>>>>>>>>   \_ libxslt 1.1.17 [OK].
>>>>>>>>   \_ expat 1.95 [OK].
>>>>>>>>   \_ bzlib N/A [OK].
>>>>>>>>
>>>>>>>> -------------------
>>>>>>>>  Core System Setup
>>>>>>>> -------------------
>>>>>>>>
>>>>>>>> Dropping umask to "0002".
>>>>>>>>
>>>>>>>> This part of the OME install will collect the initial  
>>>>>>>> information
>>>>>>>> required.
>>>>>>>> Basic directory structure and system users will be created and
>>>>>>>> the
>>>>>>>> install
>>>>>>>> environment setup. If you are unsure of a particular question,
>>>>>>>> please
>>>>>>>> choose the default as that will be more than adequate for most
>>>>>>>> people.
>>>>>>>>
>>>>>>>>        Base OME directory: /OME
>>>>>>>>      Base OMEIS directory: /OME/OMESIS
>>>>>>>>  Base temporary directory: /var/tmp/OME
>>>>>>>>             OME groupname: ome
>>>>>>>>        OME Unix  username: ome
>>>>>>>>     Apache Unix  username: apache
>>>>>>>>  Postgres admin  username: postgres
>>>>>>>>  OME Unix admin  username: ut
>>>>>>>>
>>>>>>>> Are these values correct ? [y/n]: y
>>>>>>>>
>>>>>>>> Building the core system
>>>>>>>>   \_ Checking directory "/OME".
>>>>>>>>   \_   Checking child "/OME/xml".
>>>>>>>>   \_   Checking child "/OME/bin".
>>>>>>>>   \_   Checking child "/OME/perl2".
>>>>>>>>   \_   Checking child "/OME/cgi".
>>>>>>>>   \_   Checking child "/OME/crontab".
>>>>>>>>   \_   Checking child "/OME/matlab".
>>>>>>>>   \_   Checking child "/OME/Inline".
>>>>>>>>   \_   Checking child "/OME/lib".
>>>>>>>>   \_   Checking child "/OME/java".
>>>>>>>>   \_ Checking directory "/OME/OMESIS".
>>>>>>>>   \_   Checking child "/OME/OMESIS/Files".
>>>>>>>>   \_   Checking child "/OME/OMESIS/Pixels".
>>>>>>>>   \_ Checking directory "/var/tmp/OME".
>>>>>>>>   \_   Checking child "/var/tmp/OME/lock".
>>>>>>>>   \_   Checking child "/var/tmp/OME/sessions".
>>>>>>>>   \_   Checking child "/var/tmp/OME/install".
>>>>>>>>
>>>>>>>> Copying stylesheets
>>>>>>>>   \_ src/xml/xslt/OME-CA2OME.xslt
>>>>>>>>   \_ src/xml/xslt/OME2OME-CA.xslt
>>>>>>>>
>>>>>>>> Copying IMAGE directories
>>>>>>>>   \_ images
>>>>>>>> Copying CONFIG directories
>>>>>>>>   \_ conf
>>>>>>>> Copying HTML directories
>>>>>>>>   \_ JavaScript
>>>>>>>>   \_ html
>>>>>>>>
>>>>>>>> -------------------
>>>>>>>>  Core Binary Setup
>>>>>>>> -------------------
>>>>>>>>
>>>>>>>> (All verbose information logged in /var/tmp/OME/install/
>>>>>>>> BinaryBuilds.log)
>>>>>>>>
>>>>>>>> OME can optionally be configured to work with BioFormats which
>>>>>>>> is an
>>>>>>>> external Java library that can read 50+ common microscopy file
>>>>>>>> formats.
>>>>>>>> BioFormats requires Sun Java, but if you don't need BioFormats
>>>>>>>> you
>>>>>>>> can
>>>>>>>> continue the install without Sun Java.
>>>>>>>>
>>>>>>>> Installing BioFormats
>>>>>>>>   \_ Checking for Sun Java [FOUND].
>>>>>>>>   \_ Checking for /OME/java/loci_tools.jar [FOUND].
>>>>>>>> Installing OMEIS
>>>>>>>>   \_ Configuring [SUCCESS].
>>>>>>>>   \_ Compiling [SUCCESS].
>>>>>>>>   \_ Installing [SUCCESS].
>>>>>>>> Installing omeis-http
>>>>>>>>   \_ Configuring [SUCCESS].
>>>>>>>>   \_ Compiling [SUCCESS].
>>>>>>>> Installing core binaries
>>>>>>>>   \_ Compiling [SUCCESS].
>>>>>>>>   \_ Installing [SUCCESS].
>>>>>>>>
>>>>>>>> ------------------------------
>>>>>>>>  Perl Module Dependency Setup
>>>>>>>> ------------------------------
>>>>>>>>
>>>>>>>> (All verbose information logged in /var/tmp/OME/install/
>>>>>>>> PerlModuleTask.log)
>>>>>>>>
>>>>>>>> Checking modules
>>>>>>>>   \_ Term::ReadKey 2.30 [OK].
>>>>>>>>   \_ Storable 2.15 [OK].
>>>>>>>>   \_ Carp::Assert 0.18 [OK].
>>>>>>>>   \_ Compress::Zlib 1.42 [OK].
>>>>>>>>   \_ DBI 1.52 [OK].
>>>>>>>>   \_ Digest::MD5 2.36 [OK].
>>>>>>>>   \_ MD5 [OK].
>>>>>>>>   \_ MIME::Base64 3.07 [OK].
>>>>>>>>   \_ Log::Agent 0.306 [OK].
>>>>>>>>   \_ Time::HiRes 1.86 [OK].
>>>>>>>>   \_ Date::Parse 2.27 [OK].
>>>>>>>>   \_ DBD::Pg 1.43 [OK].
>>>>>>>>   \_ Test::Harness 2.56 [OK].
>>>>>>>>   \_ Test::Simple 0.62 [OK].
>>>>>>>>   \_ HTML::Template 2.7 [OK].
>>>>>>>>   \_ IPC::Run 0.79 [OK].
>>>>>>>>   \_ Class::Accessor 0.19 [OK].
>>>>>>>>   \_ Class::Data::Inheritable 0.02 [OK].
>>>>>>>>   \_ File::Temp 0.16 [OK].
>>>>>>>>   \_ Exporter::Lite 0.01 [OK].
>>>>>>>>   \_ UNIVERSAL::exports 0.03 [OK].
>>>>>>>>   \_ URI 1.35 [OK].
>>>>>>>>   \_ HTML::Tagset 3.10 [OK].
>>>>>>>>   \_ HTML::Parser 3.55 [OK].
>>>>>>>>   \_ Parse::RecDescent 1.94 [OK].
>>>>>>>>   \_ Inline::C 0.44 [OK].
>>>>>>>>   \_ XML::NamespaceSupport 1.09 [OK].
>>>>>>>>   \_ XML::Sax 1.01 [OK].
>>>>>>>>   \_ XML::LibXML::Common 0.13 [OK].
>>>>>>>>   \_ XML::LibXML 1.62 [OK].
>>>>>>>>   \_ XML::Parser 2.34 [OK].
>>>>>>>>   \_ SOAP::Lite 0.60 [OK].
>>>>>>>>   \_ XML::LibXSLT 1.58 [OK].
>>>>>>>>   \_ OLE::Storage_Lite 0.14 [OK].
>>>>>>>>   \_ Spreadsheet::ParseExcel 0.2603 [OK].
>>>>>>>>
>>>>>>>> ------------------------
>>>>>>>>  Core Perl Module Setup
>>>>>>>> ------------------------
>>>>>>>>
>>>>>>>> (All verbose information logged in /var/tmp/OME/install/
>>>>>>>> PerlModuleTask.log)
>>>>>>>>
>>>>>>>> Installing modules
>>>>>>>>   \_ Configuring [SUCCESS].
>>>>>>>>   \_ Compiling [SUCCESS].
>>>>>>>>   \_ Installing [SUCCESS].
>>>>>>>> Use of uninitialized value in concatenation (.) or string at /
>>>>>>>> home/
>>>>>>>> ut/Desktop/OME-2.6.1/src/perl2/OME/Install/ApacheConfigTask.pm
>>>>>>>> line 75.
>>>>>>>>
>>>>>>>> --------------
>>>>>>>>  Apache Setup
>>>>>>>> --------------
>>>>>>>>
>>>>>>>> (All verbose information logged in /var/tmp/OME/install/
>>>>>>>> ApacheConfigTask.log)
>>>>>>>>
>>>>>>>> OME Apache web server configuration is a critical part of your
>>>>>>>> OME
>>>>>>>> install.
>>>>>>>> OME's web interface, remote clients and image server all use  
>>>>>>>> this
>>>>>>>> infrastructure to communicate. If you are unsure of a  
>>>>>>>> particular
>>>>>>>> question,
>>>>>>>> please choose the default as that will be more than adequate  
>>>>>>>> for
>>>>>>>> most
>>>>>>>> people.
>>>>>>>>
>>>>>>>>
>>>>>>>> Apache configuration:
>>>>>>>>         Configure Apache?: yes
>>>>>>>>   Developer configuration: no
>>>>>>>>           Server restart?: yes
>>>>>>>> Install OME servers:
>>>>>>>>            Images (omeis): yes
>>>>>>>>              Data (omeds): yes
>>>>>>>>                       Web: yes
>>>>>>>> Apache directories:
>>>>>>>>              httpd binary: /usr/sbin/httpd
>>>>>>>>          apachectl binary: /usr/sbin/apachectl
>>>>>>>>              DocumentRoot: /var/www/html
>>>>>>>>                   cgi-bin: /var/www/cgi-bin/
>>>>>>>> Web-UI HTML Templates:
>>>>>>>>   Developer configuration: no
>>>>>>>>
>>>>>>>> Are these values correct ? [y/n]: y
>>>>>>>> [Mon Jan 21 16:14:00 2008] [warn] The ScriptAlias directive  
>>>>>>>> in /
>>>>>>>> OME/conf/httpd2.omeis.conf at line 2 will probably never match
>>>>>>>> because it overlaps an earlier ScriptAlias.
>>>>>>>> Testing Apache configuration
>>>>>>>>   \__ mod_perl [FAILURE].
>>>>>>>>
>>>>>>>>
>>>>>>>> Errors executing task: Apache/mod_perl is not properly
>>>>>>>> configured.  Got an error response from http://localhost/perl2/
>>>>>>>> mod_perl_test.pl:
>>>>>>>>
>>>>>>>> ERROR: The requested URL could not be retrieved
>>>>>>>>
>>>>>>>> ERROR
>>>>>>>> The requested URL could not be retrieved
>>>>>>>>
>>>>>>>>
>>>>>>>> While trying to retrieve the URL:
>>>>>>>> http://localhost/perl2/mod_perl_test.pl
>>>>>>>>
>>>>>>>> The following error was encountered:
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> Connection Failed
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> The system returned:
>>>>>>>>     (111) Connection refused
>>>>>>>>
>>>>>>>>
>>>>>>>> The remote host or network may be down.  Please try the request
>>>>>>>> again.
>>>>>>>> Your cache administrator is webmstr at bbsrc.ac.uk.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> Generated Mon, 21 Jan 2008 16:13:28 GMT by BBSRC-wwwcache- 
>>>>>>>> service
>>>>>>>> (squid/2.5.STABLE9)
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> See /var/tmp/OME/install/ApacheConfigTask.log for more
>>>>>>>> details. at
>>>>>>>> (eval 187) line 1
>>>>>>>>
>>>>>>>>  at install.pl line 82
>>>>>>>>         main::run_tasks() called at install.pl line 266
>>>>>>>> # Looks like your test died before it could output anything.
>>>>>>>>
>>>>>>>>
>>>>>>>> _______________________________________________________________ 
>>>>>>>> __
>>>>>>>> Free games, great prizes - get gaming at Gamesbox.
>>>>>>>> http://www.searchgamesbox.com
>>>>>>>> _______________________________________________
>>>>>>>> ome-users mailing list
>>>>>>>> ome-users at lists.openmicroscopy.org.uk
>>>>>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>>>>
>>>>>>> ________________________________________________________________ 
>>>>>>> _
>>>>>>> Get Hotmail on your mobile, text MSN to 63463!
>>>>>>> http://mobile.uk.msn.com/pc/mail.aspx
>>>>>>> _______________________________________________
>>>>>>> ome-users mailing list
>>>>>>> ome-users at lists.openmicroscopy.org.uk
>>>>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>>>>
>>>>>>
>>>>>
>>>>> _________________________________________________________________
>>>>> Get Hotmail on your mobile, text MSN to 63463!
>>>>> http://mobile.uk.msn.com/pc/mail.aspx
>>>>>
>>>>
>>>
>>> _________________________________________________________________
>>> Who's friends with who and co-starred in what?
>>> http://www.searchgamesbox.com/
>>> celebrityseparation.shtml
>>
>
> _________________________________________________________________
> Get Hotmail on your mobile, text MSN to 63463!
> http://mobile.uk.msn.com/pc/mail.aspx
>

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