[ome-users] MATLAB Question or BioFormats

[Curtis Rueden]

Hi Jason,

Sorry to hear that bfopen is not working for you. What version of MATLAB are
you running? It works on my system with R14, but maybe older versions of
MATLAB have problems with the syntax we are using.

You could try removing the empty parentheses around ChannelFiller, so that
the line looks like this:

r = loci.formats.ChannelFiller;

If it still causes a problem, you could also try removing that line entirely
-- it is needed to properly expand indexed color images, but it is unlikely
that your OIBs are stored using indexed color.

-Curtis

On Feb 1, 2008 9:44 AM, Brown, Jason <Jason_Brown at urmc.rochester.edu> wrote:

>
> I am trying to use the bfopen m-file to open a .oib file in MATLAB. When I
> run the code I get the following error:
>
> ??? Error: File: C:\Documents and Settings\Jason\My
> Documents\Hospital\MatLab\Washington\bfopen.m Line: 29 Column: 32
> Expected a variable, function, or constant, found ")".
>
> This is the code from the m-file for the line it is talking about.
> r = loci.formats.ChannelFiller();
> r = loci.formats.ChannelSeparator(r);
> r = loci.formats.FileStitcher(r);
>
> Anyone else run into this problem. I've never programmed anything like
> this so can't really debug it myself...
>
> Thanks for the help,
>
> Jason Brown
> Dept. of Neurosurgery
> University of Rochester Medical Center
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20080201/964f891e/attachment.html>