[ome-users] omero installation problem

josh.moore at gmx.de josh.moore at gmx.de
Fri Dec 26 12:36:56 GMT 2008


James Chen writes:
 > Hi everyone,

Hi James.

The emma_ant.properties is not related, and the java.util.prefs
"error" is more annoying than anything else and points to a Java
installation issue.

Can you tell us what problems you're having with the server and
possibly provide the server log
(jboss-4.2.3.GA/server/default/log/server.log)?  If you've had
specific issues with the importer or insight, you might also provide
those logs (e.g. $HOME/omero/log/omeroinsight.log).

Best wishes,
~Josh.

 > I'm trying to install the latest version of omero onto an ubuntu machine,
 > but I'm having a problem starting the server. This is the error message I
 > get from the run.sh:
 > 
 > 16:50:42,909 INFO  [WebService] Using RMI server codebase:
 > http://NSCOR:8083/
 > 16:50:42,925 INFO  [Log4jService$URLWatchTimerTask] Configuring from URL:
 > resource:jboss-log4j.xml
 > 2008-12-22 16:51:15,190 ERROR [                                  STDERR]
 > (      main) Dec 22, 2008 4:51:15 PM java.util.prefs.FileSystemPreferences$7
 > run
 > WARNING: Prefs file removed in background
 > /home/james/.java/.userPrefs/prefs.xml
 > 2008-12-22 16:51:15,192 ERROR [                                  STDERR]
 > (      main) Dec 22, 2008 4:51:15 PM java.util.prefs.FileSystemPreferences$7
 > run
 > WARNING: Prefs file removed in background /etc/.java/.systemPrefs/prefs.xml
 > 2008-12-22 16:51:45,173 ERROR [                                  STDERR] (
 > Timer-3) Dec 22, 2008 4:51:45 PM java.util.prefs.FileSystemPreferences
 > syncWorld
 > WARNING: Couldn't flush system prefs: java.util.prefs.BackingStoreException:
 > /etc/.java/.systemPrefs/omero create failed.
 > 
 > The last error then repeats every 30 seconds.
 > 
 > I'm not sure if this is related, but during the build, I got this message
 > during "prepare:"
 > 
 > Could not load definitions from resource emma_ant.properties. It could not
 > be found.
 > 
 > Does anybody have any ideas?
 > 
 > Thanks,
 > James



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