[ome-users] VisBio errors
Mario Valle
mvalle at cscs.ch
Mon Nov 26 15:06:59 GMT 2007
If you try to look at an image using VisBio, the following error appears on a Mac and no
image is loaded. After this, I have another stack trace happening on Linux.
Any clue?
Thanks!
mario
java.lang.NoClassDefFoundError: org/apache/xmlrpc/XmlRpcClient
at org.openmicroscopy.ds.DataServer.getDefaultCaller(DataServer.java:
90)
at org.openmicroscopy.ds.DataServer.getDefaultServices
(DataServer.java:113)
at org.openmicroscopy.ds.DataServer.getDefaultServices
(DataServer.java:103)
at loci.visbio.ome.ImageDownloader.getSession(ImageDownloader.java:59)
at loci.visbio.ome.OMEImage.initState(OMEImage.java:380)
at loci.visbio.ome.OMEImage.<init>(OMEImage.java:136)
at loci.visbio.ome.OMEImage.makeTransform(OMEImage.java:255)
at loci.visbio.VisBioFrame.processArgument(VisBioFrame.java:308)
at loci.visbio.VisBioFrame.processArguments(VisBioFrame.java:276)
at loci.visbio.VisBioFrame.<init>(VisBioFrame.java:191)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native
Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance
(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance
(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:274)
at loci.visbio.VisBio.launch(VisBio.java:109)
at loci.visbio.VisBio.main(VisBio.java:129)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke
(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke
(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:324)
at com.sun.javaws.Launcher.executeApplication(Launcher.java:1161)
at com.sun.javaws.Launcher.executeMainClass(Launcher.java:1108)
at com.sun.javaws.Launcher.continueLaunch(Launcher.java:951)
at com.sun.javaws.Launcher.handleApplicationDesc(Launcher.java:522)
at com.sun.javaws.Launcher.handleLaunchFile(Launcher.java:218)
at com.sun.javaws.Launcher.run(Launcher.java:165)
at java.lang.Thread.run(Thread.java:552)
Stack trace on Linux
org.openmicroscopy.ds.RemoteConnectionException
at org.openmicroscopy.ds.XmlRpcCaller.invoke(XmlRpcCaller.java:233)
at org.openmicroscopy.ds.XmlRpcCaller.dispatch(XmlRpcCaller.java:392)
at org.openmicroscopy.ds.InstantiatingCaller.dispatchList(InstantiatingCaller.java:140)
at org.openmicroscopy.ds.DataFactory.retrieveList(DataFactory.java:430)
at loci.visbio.ome.ImageDownloader.retrieveImages(ImageDownloader.java:235)
at loci.visbio.ome.ImageDownloader.downloadImage(ImageDownloader.java:94)
at loci.visbio.ome.OMEImage.initState(OMEImage.java:384)
at loci.visbio.ome.OMEImage.<init>(OMEImage.java:136)
at loci.visbio.ome.OMEImage.makeTransform(OMEImage.java:255)
at loci.visbio.VisBioFrame.processArgument(VisBioFrame.java:308)
at loci.visbio.VisBioFrame.processArguments(VisBioFrame.java:276)
at loci.visbio.VisBioFrame.<init>(VisBioFrame.java:191)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at loci.visbio.VisBio.launch(VisBio.java:109)
at loci.visbio.VisBio.main(VisBio.java:129)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.javaws.Launcher.executeApplication(Unknown Source)
at com.sun.javaws.Launcher.executeMainClass(Unknown Source)
at com.sun.javaws.Launcher.continueLaunch(Unknown Source)
at com.sun.javaws.Launcher.handleApplicationDesc(Unknown Source)
at com.sun.javaws.Launcher.handleLaunchFile(Unknown Source)
at com.sun.javaws.Launcher.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: java.net.UnknownHostException: horus17
at java.net.PlainSocketImpl.connect(Unknown Source)
at java.net.SocksSocketImpl.connect(Unknown Source)
at java.net.Socket.connect(Unknown Source)
at java.net.Socket.connect(Unknown Source)
at java.net.Socket.<init>(Unknown Source)
at java.net.Socket.<init>(Unknown Source)
at org.apache.xmlrpc.XmlRpcClientLite$HttpClient.initConnection(XmlRpcClientLite.java:339)
at org.apache.xmlrpc.XmlRpcClientLite$HttpClient.<init>(XmlRpcClientLite.java:330)
at org.apache.xmlrpc.XmlRpcClientLite$LiteWorker.execute(XmlRpcClientLite.java:193)
at org.apache.xmlrpc.XmlRpcClient.execute(XmlRpcClient.java:163)
at org.openmicroscopy.ds.XmlRpcCaller.invoke(XmlRpcCaller.java:221)
... 28 more
java.lang.NullPointerException
at loci.visbio.ome.OMEImage.initState(OMEImage.java:386)
at loci.visbio.ome.OMEImage.<init>(OMEImage.java:136)
at loci.visbio.ome.OMEImage.makeTransform(OMEImage.java:255)
at loci.visbio.VisBioFrame.processArgument(VisBioFrame.java:308)
at loci.visbio.VisBioFrame.processArguments(VisBioFrame.java:276)
at loci.visbio.VisBioFrame.<init>(VisBioFrame.java:191)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at loci.visbio.VisBio.launch(VisBio.java:109)
at loci.visbio.VisBio.main(VisBio.java:129)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.javaws.Launcher.executeApplication(Unknown Source)
at com.sun.javaws.Launcher.executeMainClass(Unknown Source)
at com.sun.javaws.Launcher.continueLaunch(Unknown Source)
at com.sun.javaws.Launcher.handleApplicationDesc(Unknown Source)
at com.sun.javaws.Launcher.handleLaunchFile(Unknown Source)
at com.sun.javaws.Launcher.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
org.openmicroscopy.ds.RemoteConnectionException
at org.openmicroscopy.ds.XmlRpcCaller.invoke(XmlRpcCaller.java:233)
at org.openmicroscopy.ds.XmlRpcCaller.login(XmlRpcCaller.java:291)
at loci.visbio.ome.ImageDownloader.login(ImageDownloader.java:73)
at loci.visbio.ome.OMEImage.initState(OMEImage.java:380)
at loci.visbio.ome.OMEImage.<init>(OMEImage.java:152)
at loci.visbio.ome.OMEImage.makeTransform(OMEImage.java:255)
at loci.visbio.ome.OMEImage.makeTransform(OMEImage.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at visad.util.ReflectedUniverse.exec(ReflectedUniverse.java:247)
at loci.visbio.data.DataControls.actionPerformed(DataControls.java:516)
at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
at javax.swing.AbstractButton.doClick(Unknown Source)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source)
at java.awt.Component.processMouseEvent(Unknown Source)
at javax.swing.JComponent.processMouseEvent(Unknown Source)
at java.awt.Component.processEvent(Unknown Source)
at java.awt.Container.processEvent(Unknown Source)
at java.awt.Component.dispatchEventImpl(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Window.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)
Caused by: java.io.IOException: Unexpected Response from Server: Internal Server Error
at org.apache.xmlrpc.XmlRpcClientLite$HttpClient.sendRequest(XmlRpcClientLite.java:402)
at org.apache.xmlrpc.XmlRpcClientLite$LiteWorker.execute(XmlRpcClientLite.java:202)
at org.apache.xmlrpc.XmlRpcClient.execute(XmlRpcClient.java:163)
at org.openmicroscopy.ds.XmlRpcCaller.invoke(XmlRpcCaller.java:221)
... 38 more
java.lang.IllegalArgumentException: Have not logged in
at org.openmicroscopy.ds.XmlRpcCaller.dispatch(XmlRpcCaller.java:383)
at org.openmicroscopy.ds.InstantiatingCaller.dispatchList(InstantiatingCaller.java:140)
at org.openmicroscopy.ds.DataFactory.retrieveList(DataFactory.java:430)
at loci.visbio.ome.ImageDownloader.retrieveImages(ImageDownloader.java:235)
at loci.visbio.ome.ImageDownloader.downloadImage(ImageDownloader.java:94)
at loci.visbio.ome.OMEImage.initState(OMEImage.java:384)
at loci.visbio.ome.OMEImage.<init>(OMEImage.java:152)
at loci.visbio.ome.OMEImage.makeTransform(OMEImage.java:255)
at loci.visbio.ome.OMEImage.makeTransform(OMEImage.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at visad.util.ReflectedUniverse.exec(ReflectedUniverse.java:247)
at loci.visbio.data.DataControls.actionPerformed(DataControls.java:516)
at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
at javax.swing.AbstractButton.doClick(Unknown Source)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source)
at java.awt.Component.processMouseEvent(Unknown Source)
at javax.swing.JComponent.processMouseEvent(Unknown Source)
at java.awt.Component.processEvent(Unknown Source)
at java.awt.Container.processEvent(Unknown Source)
at java.awt.Component.dispatchEventImpl(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Window.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)
java.lang.NullPointerException
at loci.visbio.ome.OMEImage.initState(OMEImage.java:386)
at loci.visbio.ome.OMEImage.<init>(OMEImage.java:152)
at loci.visbio.ome.OMEImage.makeTransform(OMEImage.java:255)
at loci.visbio.ome.OMEImage.makeTransform(OMEImage.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at visad.util.ReflectedUniverse.exec(ReflectedUniverse.java:247)
at loci.visbio.data.DataControls.actionPerformed(DataControls.java:516)
at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
at javax.swing.AbstractButton.doClick(Unknown Source)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source)
at java.awt.Component.processMouseEvent(Unknown Source)
at javax.swing.JComponent.processMouseEvent(Unknown Source)
at java.awt.Component.processEvent(Unknown Source)
at java.awt.Container.processEvent(Unknown Source)
at java.awt.Component.dispatchEventImpl(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Window.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)
--
Ing. Mario Valle
Visualization Group | http://www.cscs.ch/~mvalle
Swiss National Supercomputing Centre (CSCS) | Tel: +41 (91) 610.82.60
v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax: +41 (91) 610.82.82
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