[ome-users] OMERO.server Upgrade Issue

[josh.moore at gmx.de]

Hi Oliver,

This is probably our black-sheep-issue #1. See

https://trac.openmicroscopy.org.uk/omero/ticket/444 

for background, but essentially, this is a JBoss/Postgres warning and
nothing fatal. Unfortunately, the only way for us to prevent this
message is to add instructions on customizing JBoss or to ship a JBoss
package ourselves.

That doesn't change the fact that after a successful deployment:

  (Rev: 1173) Ready.

your server shutdown. Can you confirm that you didn't hit Ctrl-C?

Then, there's one last issue which is, it doesn't look like you
are using the latest version. The upgrade should print out:

  (Rev: 1701) Ready.

Any ideas on how that could be since you are clearly in a
"omero-3.0-Beta2.2" directory? 

Best wishes,
~Josh

Oliver Mueller writes:
 > Dear OMERO.server team,
 > 
 > today I tried to upgrade the OMERO.server Beta 2.0 to Beta 2.2.
 > I followed the OMERO.server Upgrade Instructions and everything seemed 
 > to work fine.
 > But when I execute the run.sh, 'JBossManagedConnectionPool' throws a 
 > warning:
 > 
 > 09:06:54,226 WARN  [JBossManagedConnectionPool] Throwable while 
 > attempting to get a new connection: null
 > org.jboss.resource.JBossResourceException: Could not create connection;
 > 
 > 
 > and 'JDBCExceptionReporter' throws an error (the complete log is 
 > attached to this email):
 > 
 > Caused by:
 > org.jboss.resource.JBossResourceException: Apparently wrong driver class 
 > specified for URL: class: org.postgresql.Driver, url: 
 > jdbc:postgresql://localhost/omero3
 >    at 
 > org.jboss.resource.adapter.jdbc.local.LocalManagedConnectionFactory.getDriver(LocalManagedConnectionFactory.java:290) 



 >    at 
 > org.jboss.resource.adapter.jdbc.local.LocalManagedConnectionFactory.createManagedConnection(LocalManagedConnectionFactory.java:170) 
 > 
 >    ... 217 more
 > 
 > 
 > And that's why both, OMERO.insight and OMERO.importer
 > do not see the OMERO.server (although the last lines of the startup log say
 > 
 > 09:07:01,284 INFO  [EJBContainer] STARTED EJB: 
 > ome.services.jboss.OmeroContextHook ejbName: OmeroContextHook
 > 09:07:01,612 INFO  [STDOUT] 
 > -------------------------------------------------
 > 09:07:01,612 INFO  [STDOUT] OMERO Version: 3.0-TRUNK (Rev: 1173) Ready.
 > 09:07:01,612 INFO  [STDOUT] 
 > -------------------------------------------------
 > 09:07:01,619 INFO  [EJB3Deployer] Deployed: 
 > file:/ome/omero-install/omero-3.0-Beta2.2/jboss-4.2.1.GA/server/default/tmp/deploy/tmp54463omero.ear-contents/server-3.0-TRUNK.jar 
 > 
 > 09:07:01,626 INFO  [EARDeployer] Started J2EE application: 
 > file:/ome/omero-install/omero-3.0-Beta2.2/jboss-4.2.1.GA/server/default/deploy/omero.ear 
 > 
 > 09:07:01,716 INFO  [Http11Protocol] Starting Coyote HTTP/1.1 on 
 > http-0.0.0.0-8080
 > 09:07:01,735 INFO  [AjpProtocol] Starting Coyote AJP/1.3 on 
 > ajp-0.0.0.0-8009
 > 09:07:01,744 INFO  [Server] JBoss (MX MicroKernel) [4.2.1.GA (build: 
 > SVNTag=JBoss_4_2_1_GA date=200707131605)] Started in 1m:211ms).
 > 
 > 
 > Any suggestions? ;-)
 > 
 > The OS is AIX 5.3, the DB is PostgreSQL 8.2.4.
 > 
 > Regards,
 > Oliver Mueller
 > 
 > -- 
 > Oliver M,b|(Bller
 > 
 > Institut f,b|(Br Molekulare Zellbiologie
 > Medizinische Fakult,bd(Bt
 > Universit,bd(Bt des Saarlandes
 > Geb,bd(Bude 61 - FR 2.1 - Anatomie & Zellbiologie
 > D-66421 Homburg/Saar
 > Tel.: + 49 (0) 6841 162 61 09
 > 
 > 
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