[ome-users] OME ImageJ problem
Ilya Goldberg
igg at nih.gov
Fri Jun 1 02:22:20 BST 2007
Hi Juhui
You can change the OMEIS url using the command-line administration tool:
sudo ome admin configure
Just hit return for all the sections other than "OME Server URLs".
There, type n, and change the OMEIS URL to something other than
localhost.
-Ilya
On May 31, 2007, at 12:16 PM, Melissa Linkert wrote:
> Hi Juhui,
>
> Ah, I think I see what the problem is. It looks like the default
> image
> server was set to "localhost" when OME was installed; since the OME
> plugin
> relied on OMEDS to tell it which image server to use, the plugin
> was trying
> to upload to/download from a non-existent server on the client
> machine.
> There will be a permanent fix for this in the next major release of
> LOCI's
> ImageJ plugins. In the meantime, I would encourage you to try this
> pre-release JAR:
>
> http://skyking.microscopy.wisc.edu/melissa/loci_tools.jar
>
> Please let me know if this still does not work.
>
> Regards,
> -Melissa
>
> On 5/31/07, WANG Juhui <juhui.wang at jouy.inra.fr> wrote:
>>
>> HI, Melissa,
>>
>> I just do a test on the server host. The downloading task is
>> completed, but the uploading always stinks a little.
>>
>> 1) So we are sure it's about remote access problem. Why don't open a
>> test server at your local? this might easy the debug work!
>> 2) For the uploading, we use the 3D version of tubhiswt_C2.tiff. LOCI
>> informs that the task is finished, but only the first plane is
>> loaded
>> into the server, and the status is marked as UNFINISHED.
>>
>> Best regards!
>>
>> Juhui
>>
>> Melissa Linkert a écrit :
>>
>> > Hi Juhui,
>> >
>> > I'm sorry to hear that the OME plugin still doesn't work.
>> > Unfortunately, I haven't been able to reproduce these problems
>> using
>> > the latest version.
>> >
>> > > I would like to upload a test image provided by OME
>> > > (tubhistwt_C2.tiff)
>> > > into OME server with imageJ, but failed. The error
>> message
>> > is :
>> > >
>> > > >>upload failed
>> > > >> loci.formats.FormatException:Failed to create thumbail
>> >
>> >
>> > First of all, which version of tubhiswt_C2.tiff are you working
>> with?
>> > As far as I know, there is a 2D version (a single 512x512
>> plane), and
>> > a 3D version (20 512x512 planes). How are you opening this
>> file? If
>> > you are using the Bio-Formats importer, which options are checked?
>> >
>> > > Also, I fail to download images from OME and the
>> errors are:
>> > >
>> > > > An exception has occurred:
>> > > org.openmicroscopy.is.ImageServerException: hostname
>> >
>> >
>> > Does this error occur immediately after logging in?
>> >
>> > Thank you very much for your patience.
>> >
>> > Regards,
>> > -Melissa
>> >
>> > On 5/30/07, *WANG Juhui* <juhui.wang at jouy.inra.fr
>> > <mailto:juhui.wang at jouy.inra.fr>> wrote:
>> >
>> > Hi, Melissa,
>> >
>> > Thank you for your help, but the same errors persist!
>> >
>> > Yours!
>> >
>> > Juhui
>> >
>> > Melissa Linkert a écrit :
>> >
>> > > Hi Juhui,
>> > >
>> > > Today LOCI released a new version of the OME plugin for
>> ImageJ,
>> > which
>> > > should fix this problem. If you still experience problems,
>> > please let
>> > > me know, and we will investigate further.
>> > >
>> > > Regards,
>> > > -Melissa
>> > >
>> > > On 24/05/07, *WANG Juhui* < juhui.wang at jouy.inra.fr
>> > <mailto:juhui.wang at jouy.inra.fr>
>> > > <mailto:juhui.wang at jouy.inra.fr
>> > <mailto:juhui.wang at jouy.inra.fr>>> wrote:
>> > >
>> > > Hi,
>> > >
>> > > I would like to upload a test image provided by OME
>> > > (tubhistwt_C2.tiff)
>> > > into OME server with imageJ, but failed. The error
>> message
>> > is :
>> > >
>> > > >>upload failed
>> > > >>loci.formats.FormatException:Failed to create thumbail
>> > >
>> > > Also, I fail to download images from OME and the
>> errors are:
>> > >
>> > > > An exception has occurred:
>> > > org.openmicroscopy.is.ImageServerException: hostname
>> > >
>> > > Yours!
>> > >
>> > > --
>> > > Juhui
>> WANG Email:
>> > > juhui.wang at jouy.inra.fr <mailto:juhui.wang at jouy.inra.fr>
>> > <mailto: juhui.wang at jouy.inra.fr
>> <mailto:juhui.wang at jouy.inra.fr>>
>> > > INRA - Mathématiques et Informatique Appliquées
>> > > Tel: +(33) 01 34 65 22 29
>> > > Domaine de
>> > > Vilvert Fax:
>> +(33)
>> > 01 34
>> > > 65 22 17
>> > > F-78352 Jouy-en-Josas
>> > >
>> > >
>> > > _______________________________________________
>> > > ome-users mailing list
>> > > ome-users at lists.openmicroscopy.org.uk
>> > <mailto:ome-users at lists.openmicroscopy.org.uk>
>> > > <mailto:ome-users at lists.openmicroscopy.org.uk
>> > <mailto:ome-users at lists.openmicroscopy.org.uk>>
>> > > http://lists.openmicroscopy.org.uk/mailman/listinfo/
>> ome-users
>> > >
>> > >
>> >
>> >
>> > --
>> > Juhui
>> > WANG Email:
>> juhui.wang at jouy.inra.fr
>> > <mailto:juhui.wang at jouy.inra.fr>
>> > INRA - Mathématiques et Informatique Appliquées
>> > Tel: +(33) 01 34 65 22 29
>> > Domaine de
>> > Vilvert Fax: +(33)
>> 01 34
>> > 65 22 17
>> > F-78352 Jouy-en-Josas
>> >
>> >
>> >
>> >--------------------------------------------------------------------
>> ----
>> >
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>> >
>> >
>>
>>
>> --
>> Juhui WANG Email:
>> juhui.wang at jouy.inra.fr
>> INRA - Mathématiques et Informatique Appliquées Tel:
>> +(33) 01
>> 34 65 22 29
>> Domaine de Vilvert Fax:
>> +(33) 01
>> 34 65 22 17
>> F-78352 Jouy-en-Josas
>>
>>
>>
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