[ome-users] Installing OMERO

[Claude Bonnard]

Hi all,

>From the description found on the "what they do" page, OMERO looks a good
change in performance, architecture, etc..

Also convinced at the Dundee meeting (Dec. 05), I really want to try this, and
go into the install.

My first result is illustrated here. Maybe someone has an idea?

Thanks!

Claude

----------------------------------snip------------------------------

Script started on Mon 26 Feb 2007 10:09:22 AM CET
[omero at isrec-mim2 omero]$ pwd
/OMERO/omero-3.0-Beta1/omero
[omero at isrec-mim2 omero]$ java omero setup-db
libgcj-java-placeholder.sh

This script is a placeholder for the /usr/bin/java
master link required by jpackage.org conventions.  libgcj's
rmiregistry, rmic and jar tools are now slave symlinks to these
masters, and are managed by the alternatives(8) system.

This change was necessary because the rmiregistry, rmic and jar tools
installed by previous versions of libgcj conflicted with symlinks
installed by jpackage.org JVM packages.

This script was designed to be overridden by the supported RHEL3 JRE
packages, java-1.4.2-bea and java-1.4.2-ibm.  It is installed as an
alternative symlink as /usr/bin/java.  It will override a third-party
(non-RHEL3) JRE's java command if the JRE's bin directory is listed
after /usr/bin in PATH.  In that case, it is recommended that the
third-party JRE's bin directory be listed first in PATH instead.

Exception in thread "main" java.lang.VerifyError: verification failed at PC 4
in omero:<init>(()V): String, int, or float constant expected
   at 0x00c4aeb3: java.lang.Throwable.Throwable(java.lang.String)
(/usr/lib/./libgcj.so.3)
   at 0x00c3dd2e: java.lang.Error.Error(java.lang.String)
(/usr/lib/./libgcj.so.3)
   at 0x00c3f756: java.lang.LinkageError.LinkageError(java.lang.String)
(/usr/lib/./libgcj.so.3)
   at 0x00c4b252: java.lang.VerifyError.VerifyError(java.lang.String)
(/usr/lib/./libgcj.so.3)
   at 0x00c21749: _Jv_BytecodeVerifier.verify_fail(byte, int)
(/usr/lib/./libgcj.so.3)
   at 0x00c20e8e: _Jv_BytecodeVerifier.check_constant(int)
(/usr/lib/./libgcj.so.3)
   at 0x00c14cbd: _Jv_BytecodeVerifier.verify_instructions_0()
(/usr/lib/./libgcj.so.3)
   at 0x00c139d7: _Jv_VerifyMethod(_Jv_InterpMethod) (/usr/lib/./libgcj.so.3)
   at 0x00c0bc74: _Jv_PrepareClass(java.lang.Class) (/usr/lib/./libgcj.so.3)
   at 0x00c2a198: java.lang.ClassLoader.linkClass0(java.lang.Class)
(/usr/lib/./libgcj.so.3)
   at 0x00c3cd53: java.lang.ClassLoader.resolveClass0(java.lang.Class)
(/usr/lib/./libgcj.so.3)
   at 0x00c2860c: java.lang.Class.initializeClass() (/usr/lib/./libgcj.so.3)
   at 0x00c26ea4: java.lang.Class.forName(java.lang.String, boolean,
java.lang.ClassLoader) (/usr/lib/./libgcj.so.3)
   at 0x00c26f3f: java.lang.Class.forName(java.lang.String)
(/usr/lib/./libgcj.so.3)
   at 0x00c8f099: gnu.gcj.runtime.FirstThread.run() (/usr/lib/./libgcj.so.3)
   at 0x00c31cfc: _Jv_ThreadRun(java.lang.Thread) (/usr/lib/./libgcj.so.3)
   at 0x00bfe5bc: _Jv_RunMain(java.lang.Class, byte const, int, byte const,
boolean) (/usr/lib/./libgcj.so.3)
   at 0x08048930: ?? (??:0)
   at 0x0012f79a: __libc_start_main (/lib/tls/libc.so.6)
   at 0x080486e1: ?? (??:0)
[omero at isrec-mim2 omero]$ exit

Script done on Mon 26 Feb 2007 10:11:14 AM CET
------------------------snip------------------------------------------------

-- 
Claude Bonnard Ph.D.
ISREC (Swiss Institute for Experimental Cancer Research)
Microscopy, Imaging and Morphology Core Facility [MIM] 
Lab F216
Ch des Boveresses 155
CH-1066 Epalinges
Switzerland
email: claude.bonnard at isrec.unil.ch
phone: [41-21]-692-5891
  fax: [41-21]-652-6933