[ome-users] Matlab Integration

[Brian Ruttenberg]

Hi, I'm currently trying to integrate a matlab analysis module into OME 
and I'm running into some trouble.  This module has been integrated 
before, so the errors  I'm getting are quite perplexing...


ome:   Executing!
         1/55: [IN PROGRESS] Currently Executing `BinaryImage`
ome: Could not find utility library, using the engine instead.
        Error message: Can't locate OME/Matlab/Lib/Utility.pm in @INC 
(@INC contains: /OME/Inline/lib /etc/perl /usr/local/lib/perl/5.8.8 
/usr/local/share/perl/5.8.8 /usr/lib/perl5 /usr/share/perl5 
/usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl .) at 
(eval 686) line 2, <STDIN> line 3.
BEGIN failed--compilation aborted at (eval 686) line 2, <STDIN> line 3.

ome: Matlab src dir is /bioimage/ome/src/matlab
ome: Matlab exec is /usr/share/matlab_2006/bin/matlab
ome:       Error during execution: :1: namespace error : Namespace 
prefix xsi for schemaLocation on ExecutionInstructions is not defined
chemas/MLI/IR2/MLI.xsd 
http://www.openmicroscopy.org/XMLschemas/MLI/IR2/MLI.xsd"
                                                                               
^
 at /usr/local/share/perl/5.8.8/OME/Analysis/Handlers/MatlabHandler.pm 
line 230


The second error, about the namespace, is being reported my OME as the 
reason why this Analysis Execution failed.  The execution instructions 
declaration is the same as the one given in the matlab example, like:

<ExecutionInstructions ExecutionGranularity="I" 
xmlns="http://www.openmicroscopy.org/XMLschemas/MLI/IR2/MLI.xsd" 
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 
xsi:schemaLocation="http://www.openmicroscopy.org/XMLschemas/MLI/IR2/MLI.xsd 
http://www.openmicroscopy.org/XMLschemas/MLI/IR2/MLI.xsd">


  Does anyone have any idea where I could be going wrong here?  I've 
been banging my head on this for a couple of days but to no avail.