[ome-users] Install problems

[Curtis Rueden]

Hi Glenn,

I am not an expert on DBD::Pg, but it sounds like some kind of
installation problem. Since Fedora Core is one of the supported OME
systems, and I'm guessing the Baltimore folks have not run into this
problem, it is probably something specific to your system. What do you
get when you execute:
    perl -e 'use DBD::Pg; print "$DBD::Pg::VERSION\n";'
?

-Curtis

On 9/28/06, Glenn Pierce <pierce at gci.ac.uk> wrote:
> Hi I am running Fedora Core 5 and I am having trouble with the install.
>
> First I tried the stable version and I can get to the point where the database is setup but one of the import xml files fails to import.
> The error is
>
> SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Experiment.ome"
> SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Plate.ome"
> SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Screen.ome"
> SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Experimenter.ome"
> SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Group.ome"
> SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Instrument.ome"
> SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Image.ome"
> SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/OMEIS/Repository.ome"
> SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/OMEIS/OriginalFile.ome"
> ERROR LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Import/ImportModule.ome" -- OUTPUT: "DBD::Pg::st execute failed: ERROR:  syntax error at or near "$1" at character 172
>
>
> I then tried the development version and when tring to install DBD::Pg it fails to run the test cases.
>
> The error is
>
> Would you like to install the module from the OME repository ? [y/n]: y
>     \_ Pre-install [SUCCESS].
>     \_ Downloading http://openmicroscopy.org/packages/perl/DBD-Pg-1.43.tar.gz [SUCCESS].
>     \_ Unpacking [SUCCESS].
>     \_ Configuring [SUCCESS].
>     \_ Compiling [SUCCESS].
>     \_ Testing [FAILURE].
>
>
> error is the folling repeated many times.
>
> Test returned status 255 (wstat 65280, 0xff00)
>  t/03dbmethod........Can't load '/usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi/auto/DBI/DBI.so' for module DBI: /usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi/auto/DBI/DBI.so: undefined symbol: Perl_sv_2iv_flags at /usr/lib/perl5/5.8.8/i386-linux-thread-multi/DynaLoader.pm line 230.
>   at /usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi/DBI.pm line 259
>  BEGIN failed--compilation aborted at /usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi/DBI.pm line 259.
>  Compilation failed in require at t/03dbmethod.t line 15.
>  BEGIN failed--compilation aborted at t/03dbmethod.t line 15.
>  # Looks like your test died before it could output anything.
>  dubious
>
> Ideally I would like to run the developemt version as we have plans to contribute.
> Has anyone seen this error ?
>
> Thanks
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