[ome-users] Install problems

Glenn Pierce pierce at gci.ac.uk
Thu Sep 28 14:03:45 BST 2006


Hi I am running Fedora Core 5 and I am having trouble with the install.

First I tried the stable version and I can get to the point where the database is setup but one of the import xml files fails to import.
The error is

SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Experiment.ome"
SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Plate.ome"
SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Screen.ome"
SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Experimenter.ome"
SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Group.ome"
SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Instrument.ome"
SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/Image.ome"
SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/OMEIS/Repository.ome"
SUCCESS LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Core/OMEIS/OriginalFile.ome"
ERROR LOADING XML FILE "/home/glenn/development/OME/src/xml/OME/Import/ImportModule.ome" -- OUTPUT: "DBD::Pg::st execute failed: ERROR:  syntax error at or near "$1" at character 172


I then tried the development version and when tring to install DBD::Pg it fails to run the test cases.

The error is 

Would you like to install the module from the OME repository ? [y/n]: y
    \_ Pre-install [SUCCESS].
    \_ Downloading http://openmicroscopy.org/packages/perl/DBD-Pg-1.43.tar.gz [SUCCESS].
    \_ Unpacking [SUCCESS].
    \_ Configuring [SUCCESS].
    \_ Compiling [SUCCESS].
    \_ Testing [FAILURE].


error is the folling repeated many times.

Test returned status 255 (wstat 65280, 0xff00)
 t/03dbmethod........Can't load '/usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi/auto/DBI/DBI.so' for module DBI: /usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi/auto/DBI/DBI.so: undefined symbol: Perl_sv_2iv_flags at /usr/lib/perl5/5.8.8/i386-linux-thread-multi/DynaLoader.pm line 230.
  at /usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi/DBI.pm line 259
 BEGIN failed--compilation aborted at /usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi/DBI.pm line 259.
 Compilation failed in require at t/03dbmethod.t line 15.
 BEGIN failed--compilation aborted at t/03dbmethod.t line 15.
 # Looks like your test died before it could output anything.
 dubious

Ideally I would like to run the developemt version as we have plans to contribute.
Has anyone seen this error ?

Thanks



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