[ome-users] OME install fails
gerhard
bi1825 at fh-weihenstephan.de
Wed Sep 6 09:32:20 BST 2006
Hello,
here's the apache log.
Output access log file
< 127.0.0.1 - - [06/Sep/2006:10:26:20 +0200] "POST /shoola/ HTTP/1.1" 406 - "-" "SOAP::Lite/Perl/0.55"
Output error log file
1227,1228d1226
< [Wed Sep 06 10:28:09 2006] [error] [client 127.0.0.1] failed to resolve handler `OME::Remote::Apache::XMLRPC': Can't locate Apache/Constants.pm in @INC (@INC contains: /OME/Inline/lib /srv/www/perl-lib /usr/lib/perl5/5.8.6/i586-linux-thread-multi /usr/lib/perl5/5.8.6 /usr/lib/perl5/site_perl/5.8.6/i586-linux-thread-multi /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.6/i586-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl . /srv/www) at /usr/lib/perl5/site_perl/5.8.6/OME/Remote/Apache/XMLRPC.pm line 15.\nBEGIN failed--compilation aborted at /usr/lib/perl5/site_perl/5.8.6/OME/Remote/Apache/XMLRPC.pm line 15.\nCompilation failed in require at (eval 1323) line 3.\n
< [Wed Sep 06 10:28:09 2006] [error] [client 127.0.0.1] no acceptable variant: /usr/share/apache2/error/HTTP_INTERNAL_SERVER_ERROR.html.var
Thanks
gerhard
Ilya Goldberg wrote:
>
> On Sep 1, 2006, at 3:25 PM, gerhard wrote:
>
>> Thanks very much for your help.
>> I get the following output from the XMLRPC,pl test.
>>
>>
>> Using OME server 'http://localhost/shoola/'
>>
>> Please login to OME:
>> Username? omeadmin
>> Password?
>> Calling createSession (omeadmin,***PASSWORD HIDDEN***)
>> 500 Internal Server Error
>
> What does the Apache log show when you get this error?
> -I
>
>
>>
>>
>>
>> Ilya Goldberg wrote:
>>
>>> Although the XMLRPC interface works using HTTP, pointing a browser at
>>> this URL will cause an error because XMLRPC operates solely by POST
>>> requests, whereas a browser generates GET requests unless its
>>> submitting a form. Remember that you have to change the server URLs
>>> (back-end and omeis) in the Shoola configuration file (config/
>>> container.xml) for it to find your servers.
>>>
>>> You can also try the interactive XMLRPC perl client tester here:
>>>
>>> perl src/perl2/OME/Tests/XMLRPC.pl
>>> You can supply a shoola URL on the command-line like so:
>>> perl src/perl2/OME/Tests/XMLRPC.pl http://localhost/shoola
>>> Either way, this will prompt you for a login to get an OME session,
>>> after which you can specify raw XMLRPC calls to a local or remote OME
>>> server. Here's a sample transcript:
>>> .....
>>> Using OME server 'http://localhost/shoola'
>>>
>>> Please login to OME:
>>> Username? igg
>>> Password?
>>> Calling createSession (igg,***PASSWORD HIDDEN***)
>>> Got 'e97410fb7cd8217de65cb9041d44efcd'
>>>
>>> Method? getDefaultRepository
>>> Parameters:
>>>
>>> Calling dispatch (e97410fb7cd8217de65cb9041d44efcd,
>>> getDefaultRepository)
>>> Got 'HASH(0x196fcdc)'
>>> $VAR1 = {
>>> 'ImageServerURL' => 'http://IGG-Lapzilla.local/cgi-bin/
>>> omeis',
>>> 'id' => '4'
>>> };
>>>
>>>
>>> Method?
>>> .....
>>>
>>> Note that you have to have the perl LWP package installed, which used
>>> to be a dependency for the OME server, but no longer is. Try
>>> XMLRPC.pl and it will complain that it can't find LWP if you don't
>>> have it. You can get it here:
>>> http://openmicroscopy.org/packages/perl/libwww-perl-5.69.tar.gz
>>> (tar -zxvf libwww-perl-5.69.tar.gz ; cd libwww-perl-5.69 ; perl
>>> Makefile.PL ; make ; sudo make install)
>>>
>>>
>>>
>>> -Ilya
>>>
>>>
>>> On Aug 31, 2006, at 12:11 PM, Curtis Rueden wrote:
>>>
>>>> Well, I also get a "500 Internal Server Error" with my OME system
>>>> when I try to access the shoola path directly through a web browser.
>>>> It's not designed to be accessed that way -- only with Java clients
>>>> like Shoola or the OME Plugin for ImageJ. (Have you tried the OME
>>>> Plugin for ImageJ? http://www.loci.wisc.edu/ome/ imagej.html)
>>>>
>>>> -Curtis
>>>>
>>>> On 8/31/06, gerhard < bi1825 at fh-weihenstephan.de> wrote:I think it's
>>>> not a Shoola specific problem.
>>>> See attachment of the mail.
>>>> It looks like that apache doesn't know about /localhost/shoola.
>>>> Maybe
>>>> Ihave to reeinstall Apache to get it working.
>>>>
>>>> Thanks very much
>>>> Gerhard
>>>>
>>>>
>>>> Curtis Rueden wrote:
>>>>
>>>>> Hi Gerhard,
>>>>>
>>>>> Hopefully someone more knowledgeable about Shoola can answer your
>>>>> questions, but as far as I know you should not need to update
>>>> anything
>>>>> additional for things to work. When you say you can't connect,
>>>>> do you
>>>>> receive an error message? If so, can you forward it to the list?
>>>>>
>>>>> Thanks,
>>>>> Curtis
>>>>>
>>>>> On 8/30/06, *gerhard* <bi1825 at fh-weihenstephan.de
>>>>> <mailto:bi1825 at fh-weihenstephan.de>> wrote:
>>>>>
>>>>> Thanks for your help the installation works now but I have
>>>> problems
>>>>> connecting via the remote Framework (I cant connect to OME via
>>>>> shoola).
>>>>> The OME conf files are loaded by apache.
>>>>> So do I have to update some other libraries to get it working?
>>>>> The installation script showed no errors.
>>>>>
>>>>> Thanks
>>>>> Gerhard
>>>>>
>>>>>
>>>>> Curtis Rueden wrote:
>>>>>
>>>>>> Hi Gerhard,
>>>>>>
>>>>>> I fixed this error on my system by upgrading to DBD::Pg
>>>> 1.43. If you
>>>>>> can uninstall DBD::Pg, then rerun the OME installer, it will
>>>>> prompt to
>>>>>> download and install this version for you.
>>>>>>
>>>>>> -Curtis
>>>>>>
>>>>>> On 8/29/06, *gerhard* < bi1825 at fh-weihenstephan.de
>>>>> <mailto:bi1825 at fh-weihenstephan.de>
>>>>>> <mailto: bi1825 at fh-weihenstephan.de
>>>>> <mailto:bi1825 at fh-weihenstephan.de>>> wrote:
>>>>>>
>>>>>> Hello,
>>>>>> I tried to install the latest OME Version but I got the
>>>>> following
>>>>>> error
>>>>>> (see end of the mail).
>>>>>> Before I used version 2.4 without any problems.
>>>>>> To install the new version I dropped the ome database and
>>>>> deleted the
>>>>>> OME directory.
>>>>>> I am using postgres 8.0.3.
>>>>>>
>>>>>> Thanks for help
>>>>>>
>>>>>>
>>>>>> ------------------------
>>>>>> Bootstrapping Database
>>>>>> ------------------------
>>>>>>
>>>>>> \__ Creating repository object
>>>>>>
>>>>>> OMEIS URL set to ' http://localhost/cgi-bin/omeis'. OK ?
>>>>> [y/n]: y
>>>>>> Checking OMEIS repository DBD::Pg::st execute failed:
>>>>>> FEHLER: Operator
>>>>>> existiert nicht: boolean = integer at
>>>>>> /home/gerhard/OME/OME/src/perl2/OME/Factory.pm line 1107,
>>>>> <STDIN>
>>>>>> line 8.
>>>>>>
>>>>>>
>>>>>> Errors executing task: DBD::Pg::st execute failed:
>>>>> FEHLER: Operator
>>>>>> existiert nicht: boolean = integer at
>>>>>> /home/gerhard/OME/OME/src/perl2/OME/Factory.pm line 1107,
>>>>> <STDIN>
>>>>>> line 8.
>>>>>>
>>>>>> at ./install.pl line 81
>>>>>> main::run_tasks() called at ./install.pl line 265
>>>>>> # Looks like your test died before it could output
>>>> anything.
>>>>>>
>>>>>> _______________________________________________
>>>>>> ome-users mailing list
>>>>>> ome-users at lists.openmicroscopy.org.uk
>>>>> <mailto:ome-users at lists.openmicroscopy.org.uk>
>>>>>> <mailto: ome-users at lists.openmicroscopy.org.uk
>>>>> <mailto:ome-users at lists.openmicroscopy.org.uk>>
>>>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-
>>>> users
>>>>>>
>>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> ome-users mailing list
>>>>> ome-users at lists.openmicroscopy.org.uk
>>>>> <mailto:ome-users at lists.openmicroscopy.org.uk>
>>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>> <http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>> Server error!
>>>>
>>>> The server encountered an internal error and was unable to complete
>>>> your request. Either the server is overloaded or there was an error
>>>> in a CGI script.
>>>>
>>>> If you think this is a server error, please contact the webmaster.
>>>> Error 500
>>>>
>>>>
>>>> _______________________________________________
>>>> ome-users mailing list
>>>> ome-users at lists.openmicroscopy.org.uk
>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> ome-users mailing list
>>>> ome-users at lists.openmicroscopy.org.uk
>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>
>>>
>>>
>>
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
>
>
More information about the ome-users
mailing list