[ome-users] OME install fails
gerhard
bi1825 at fh-weihenstephan.de
Fri Sep 1 20:25:19 BST 2006
Thanks very much for your help.
I get the following output from the XMLRPC,pl test.
Using OME server 'http://localhost/shoola/'
Please login to OME:
Username? omeadmin
Password?
Calling createSession (omeadmin,***PASSWORD HIDDEN***)
500 Internal Server Error
Ilya Goldberg wrote:
> Although the XMLRPC interface works using HTTP, pointing a browser at
> this URL will cause an error because XMLRPC operates solely by POST
> requests, whereas a browser generates GET requests unless its
> submitting a form. Remember that you have to change the server URLs
> (back-end and omeis) in the Shoola configuration file (config/
> container.xml) for it to find your servers.
>
> You can also try the interactive XMLRPC perl client tester here:
>
> perl src/perl2/OME/Tests/XMLRPC.pl
> You can supply a shoola URL on the command-line like so:
> perl src/perl2/OME/Tests/XMLRPC.pl http://localhost/shoola
> Either way, this will prompt you for a login to get an OME session,
> after which you can specify raw XMLRPC calls to a local or remote OME
> server. Here's a sample transcript:
> .....
> Using OME server 'http://localhost/shoola'
>
> Please login to OME:
> Username? igg
> Password?
> Calling createSession (igg,***PASSWORD HIDDEN***)
> Got 'e97410fb7cd8217de65cb9041d44efcd'
>
> Method? getDefaultRepository
> Parameters:
>
> Calling dispatch (e97410fb7cd8217de65cb9041d44efcd,
> getDefaultRepository)
> Got 'HASH(0x196fcdc)'
> $VAR1 = {
> 'ImageServerURL' => 'http://IGG-Lapzilla.local/cgi-bin/ omeis',
> 'id' => '4'
> };
>
>
> Method?
> .....
>
> Note that you have to have the perl LWP package installed, which used
> to be a dependency for the OME server, but no longer is. Try
> XMLRPC.pl and it will complain that it can't find LWP if you don't
> have it. You can get it here:
> http://openmicroscopy.org/packages/perl/libwww-perl-5.69.tar.gz
> (tar -zxvf libwww-perl-5.69.tar.gz ; cd libwww-perl-5.69 ; perl
> Makefile.PL ; make ; sudo make install)
>
>
>
> -Ilya
>
>
> On Aug 31, 2006, at 12:11 PM, Curtis Rueden wrote:
>
>> Well, I also get a "500 Internal Server Error" with my OME system
>> when I try to access the shoola path directly through a web browser.
>> It's not designed to be accessed that way -- only with Java clients
>> like Shoola or the OME Plugin for ImageJ. (Have you tried the OME
>> Plugin for ImageJ? http://www.loci.wisc.edu/ome/ imagej.html)
>>
>> -Curtis
>>
>> On 8/31/06, gerhard < bi1825 at fh-weihenstephan.de> wrote:I think it's
>> not a Shoola specific problem.
>> See attachment of the mail.
>> It looks like that apache doesn't know about /localhost/shoola. Maybe
>> Ihave to reeinstall Apache to get it working.
>>
>> Thanks very much
>> Gerhard
>>
>>
>> Curtis Rueden wrote:
>>
>> > Hi Gerhard,
>> >
>> > Hopefully someone more knowledgeable about Shoola can answer your
>> > questions, but as far as I know you should not need to update
>> anything
>> > additional for things to work. When you say you can't connect, do you
>> > receive an error message? If so, can you forward it to the list?
>> >
>> > Thanks,
>> > Curtis
>> >
>> > On 8/30/06, *gerhard* <bi1825 at fh-weihenstephan.de
>> > <mailto:bi1825 at fh-weihenstephan.de>> wrote:
>> >
>> > Thanks for your help the installation works now but I have
>> problems
>> > connecting via the remote Framework (I cant connect to OME via
>> > shoola).
>> > The OME conf files are loaded by apache.
>> > So do I have to update some other libraries to get it working?
>> > The installation script showed no errors.
>> >
>> > Thanks
>> > Gerhard
>> >
>> >
>> > Curtis Rueden wrote:
>> >
>> > > Hi Gerhard,
>> > >
>> > > I fixed this error on my system by upgrading to DBD::Pg
>> 1.43. If you
>> > > can uninstall DBD::Pg, then rerun the OME installer, it will
>> > prompt to
>> > > download and install this version for you.
>> > >
>> > > -Curtis
>> > >
>> > > On 8/29/06, *gerhard* < bi1825 at fh-weihenstephan.de
>> > <mailto:bi1825 at fh-weihenstephan.de>
>> > > <mailto: bi1825 at fh-weihenstephan.de
>> > <mailto:bi1825 at fh-weihenstephan.de>>> wrote:
>> > >
>> > > Hello,
>> > > I tried to install the latest OME Version but I got the
>> > following
>> > > error
>> > > (see end of the mail).
>> > > Before I used version 2.4 without any problems.
>> > > To install the new version I dropped the ome database and
>> > deleted the
>> > > OME directory.
>> > > I am using postgres 8.0.3.
>> > >
>> > > Thanks for help
>> > >
>> > >
>> > > ------------------------
>> > > Bootstrapping Database
>> > > ------------------------
>> > >
>> > > \__ Creating repository object
>> > >
>> > > OMEIS URL set to ' http://localhost/cgi-bin/omeis'. OK ?
>> > [y/n]: y
>> > > Checking OMEIS repository DBD::Pg::st execute failed:
>> > > FEHLER: Operator
>> > > existiert nicht: boolean = integer at
>> > > /home/gerhard/OME/OME/src/perl2/OME/Factory.pm line 1107,
>> > <STDIN>
>> > > line 8.
>> > >
>> > >
>> > > Errors executing task: DBD::Pg::st execute failed:
>> > FEHLER: Operator
>> > > existiert nicht: boolean = integer at
>> > > /home/gerhard/OME/OME/src/perl2/OME/Factory.pm line 1107,
>> > <STDIN>
>> > > line 8.
>> > >
>> > > at ./install.pl line 81
>> > > main::run_tasks() called at ./install.pl line 265
>> > > # Looks like your test died before it could output
>> anything.
>> > >
>> > > _______________________________________________
>> > > ome-users mailing list
>> > > ome-users at lists.openmicroscopy.org.uk
>> > <mailto:ome-users at lists.openmicroscopy.org.uk>
>> > > <mailto: ome-users at lists.openmicroscopy.org.uk
>> > <mailto:ome-users at lists.openmicroscopy.org.uk>>
>> > > http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-
>> users
>> > >
>> > >
>> >
>> > _______________________________________________
>> > ome-users mailing list
>> > ome-users at lists.openmicroscopy.org.uk
>> > <mailto:ome-users at lists.openmicroscopy.org.uk>
>> > http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>> > <http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users>
>> >
>> >
>>
>>
>>
>> Server error!
>>
>> The server encountered an internal error and was unable to complete
>> your request. Either the server is overloaded or there was an error
>> in a CGI script.
>>
>> If you think this is a server error, please contact the webmaster.
>> Error 500
>>
>>
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>> ome-users at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
>>
>>
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