[ome-users] installation problem on FC4

Tue Jul 11 16:14:08 BST 2006

Hello, 

I am trying to install a fresh OME-cvs version from today on FC4. This is
what I did:

 1026  cd newOME/

 1027  cvs -z3 -d ':pserver:anoncvs at cvs.openmicroscopy.org.uk:/ome' checkout
OME

 1028  ls

 1029  cd OME/

 1030  ls

 1031  sudo perl install.pl

This is what I get:

=================================================================

[bernd at rbp05jagla6 OME]$ sudo perl install.pl -y

------------------

 Pre-Installation

------------------

Term::ReadKey - Version 2.30 

Storable - Version 2.13 

----------------------------

 C Library Dependency Setup

----------------------------

(All verbose information logged in /var/tmp/ome-lib-check/LibraryTask.log)

Checking libraries

  \_ libssl 0.9.7 [OK].

  \_ libpng 1.2.8 [OK].

  \_ libjpeg 62 [OK].

  \_ libcurl 7.13.1 [OK].

  \_ libtiff 3.7.1 [OK].

  \_ zlib 1.2.2.2 [OK].

  \_ libdb_B-Tree 3 [OK].

  \_ libxml2 2.6.20 [OK].

  \_ libxslt 1.1.14 [OK].

  \_ expat 1.95 [OK].

  \_ bzlib N/A [OK].

-------------------

 Core System Setup

-------------------

Dropping umask to "0002".

This part of the OME install will collect the initial information required.

Basic directory structure and system users will be created and the install

environment setup. If you are unsure of a particular question, please

choose the default as that will be more than adequate for most people.

       Base OME directory: /OME

     Base OMEIS directory: /OME/OMEIS

 Base temporary directory: /var/tmp/OME

            OME groupname: ome

       OME Unix  username: ome

    Apache Unix  username: apache

 Postgres admin  username: postgres

 OME Unix admin  username: bernd

Are these values correct ? [y/n]: y

Building the core system

  \_ Checking directory "/OME".

  \_   Setting permissions to 02755.

  \_   Checking child "/OME/xml".

  \_   Checking child "/OME/bin".

  \_     Setting permissions to 02755 (recursively).

  \_   Checking child "/OME/perl2".

  \_   Checking child "/OME/cgi".

  \_   Checking child "/OME/crontab".

  \_   Checking child "/OME/matlab".

  \_ Checking directory "/OME/OMEIS".

  \_   Checking child "/OME/OMEIS/Files".

  \_   Checking child "/OME/OMEIS/Pixels".

  \_ Checking directory "/var/tmp/OME".

  \_   Checking child "/var/tmp/OME/lock".

  \_   Checking child "/var/tmp/OME/sessions".

  \_   Checking child "/var/tmp/OME/install".

  \_   Checking child "/var/tmp/OME/Inline".

Copying stylesheets

  \_ src/xml/xslt/OME-CA2OME.xslt

  \_ src/xml/xslt/OME2OME-CA.xslt

Copying IMAGE directories

  \_ images

Copying CONFIG directories

  \_ conf

Copying HTML directories

  \_ JavaScript

  \_ html

-------------------

 Core Binary Setup

-------------------

(All verbose information logged in /var/tmp/OME/install/BinaryBuilds.log)

Installing OMEIS

  \_ Configuring [SUCCESS].

  \_ Compiling [SUCCESS].

  \_ Installing [SUCCESS].

Installing omeis-http

  \_ Configuring [SUCCESS].

  \_ Compiling [SUCCESS].

Installing core binaries

  \_ Compiling [SUCCESS].

  \_ Installing [SUCCESS].

------------------------------

 Perl Module Dependency Setup

------------------------------

(All verbose information logged in /var/tmp/OME/install/PerlModuleTask.log)

Checking modules

  \_ Term::ReadKey 2.30 [OK].

  \_ Storable 2.13 [OK].

  \_ Carp::Assert 0.18 [OK].

  \_ Compress::Zlib 1.37 [OK].

  \_ DBI 1.48 [OK].

  \_ Digest::MD5 2.33 [OK].

  \_ MD5 [OK].

  \_ MIME::Base64 3.05 [OK].

  \_ Log::Agent 0.307 [OK].

  \_ Time::HiRes 1.65 [OK].

  \_ DBD::Pg 1.41 [OK].

  \_ Test::Harness 2.42 [OK].

  \_ Test::Simple 0.47 [OK].

  \_ HTML::Template 2.8 [OK].

  \_ IPC::Run 0.79 [OK].

  \_ Class::Accessor 0.22 [OK].

  \_ Class::Data::Inheritable 0.04 [OK].

  \_ File::Temp 0.14 [OK].

  \_ Exporter::Lite 0.01 [OK].

  \_ UNIVERSAL::exports 0.03 [OK].

  \_ URI 1.35 [OK].

  \_ HTML::Tagset 3.04 [OK].

  \_ HTML::Parser 3.45 [OK].

  \_ Parse::RecDescent 1.94 [OK].

  \_ Inline::C 0.44 [OK].

  \_ XML::Sax 1.01 [OK].

  \_ XML::LibXML::Common 0.13 [OK].

  \_ XML::LibXML 1.58 [OK].

  \_ XML::Parser 2.34 [OK].

  \_ SOAP::Lite 0.67 [OK].

  \_ XML::LibXSLT 1.58 [OK].

  \_ OLE::Storage_Lite 0.14 [OK].

  \_ Spreadsheet::ParseExcel 0.2603 [OK].

------------------------

 Core Perl Module Setup

------------------------

(All verbose information logged in /var/tmp/OME/install/PerlModuleTask.log)

Installing modules

  \_ Configuring [SUCCESS].

  \_ Compiling [SUCCESS].

  \_ Installing [SUCCESS].

--------------

 Apache Setup

--------------

(All verbose information logged in
/var/tmp/OME/install/ApacheConfigTask.log)

OME Apache web server configuration is a critical part of your OME install.

OME's web interface, remote clients and image server all use this

infrastructure to communicate. If you are unsure of a particular question,

please choose the default as that will be more than adequate for most

people.

Apache configuration:

        Configure Apache?: yes

  Developer configuration: yes

          Server restart?: yes

Install OME servers:

           Images (omeis): yes

             Data (omeds): yes

                      Web: yes

Apache directories:

             httpd binary: /usr/sbin/httpd

         apachectl binary: /usr/sbin/apachectl

             DocumentRoot: /var/www/html

                  cgi-bin: /var/www/cgi-bin

Web-UI HTML Templates: 

  Developer configuration: yes

 HTML Templates directory: /home/bernd/ome_cvs/OME/src/html/Templates

Are these values correct ? [y/n]: y

[Tue Jul 11 11:04:25 2006] [warn] The ScriptAlias directive in
/OME/conf/httpd2.omeis-dev.conf at line 2 will probably never match because
it overlaps an earlier ScriptAlias.

Testing Apache configuration 

  \__ mod_perl [SUCCESS].

  \__ omeis [SUCCESS].

Dropping umask to "0002".

Installing HTML Templates for Web-UI 

  \__ Verifying structure of /home/bernd/ome_cvs/OME/src/html/Templates
Can't stat /home/bernd/ome_cvs/OME/src/html/Templates: No such file or
directory

 at /home/bernd/allOMEs/newOME/OME/src/perl2/OME/Install/Util.pm line 570

[SUCCESS].

Templates structure doesn't exist; it will be created.

  \__ Updating user templates 

Errors executing task: Couldn't copy file
/home/bernd/allOMEs/newOME/OME/src/html/Templates/Actions/README: No such
file or directory at
/home/bernd/allOMEs/newOME/OME/src/perl2/OME/Install/ApacheConfigTask.pm
line 1259

 at install.pl line 81

        main::run_tasks() called at install.pl line 265

# Looks like your test died before it could output anything.

[bernd at rbp05jagla6 OME]$

Anybody any suggestions? I recently moved the hard drive with all the FC4
stuff to a different computer and managed to get it working. So I don't
really think it has something to do with this, but who knows????

Thanks a lot

Bernd

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