[ome-users] DBD::PG install error

McCaughey, Michael J michael.j.mccaughey at Vanderbilt.Edu
Wed Feb 1 22:08:52 GMT 2006


I was using 1.42... when using your 1.32 (thank you for making this available) and 1.22 (from OME repository), I can compile correctly but 'make test' bombs:

qTESTING MODULE -- 'make test'
FAILURE -- OUTPUT: "PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-
e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
 t/00basic...........Can't load '/var/tmp/OME/install/DBD-Pg-1.32/blib/arch/auto
/DBD/Pg/Pg.so' for module DBD::Pg: libpq.so.4: cannot open shared object file: N
o such file or directory at /usr/lib64/perl5/5.8.5/x86_64-linux-thread-multi/Dyn
aLoader.pm line 230.
  at t/00basic.t line 4
 Compilation failed in require at t/00basic.t line 4.
 
but it is there:
[OME]# ls -l /var/tmp/OME/install/DBD-Pg-1.32/blib/arch/auto/DBD/Pg/Pg.so
-rwxr-xr-x  1 root root 246839 Feb  1 15:45 /var/tmp/OME/install/DBD-Pg-1.32/blib/arch/auto/DBD/Pg/Pg.so

Do I need to change all of DBI? I'm running version 1.40.


Michael J. MCaughey, PhD
Molecular Physiology and Biophysics
U9203 MRBIII
6-6175



-----Original Message-----
From: Curtis Rueden [mailto:ctrueden at wisc.edu]
Sent: Wed 2/1/2006 1:51 PM
To: McCaughey, Michael J
Cc: ome-users at lists.openmicroscopy.org.uk
Subject: Re: [ome-users] DBD::PG install error
 
Hi Mike,

I have not seen that exact error message, but my lab has had 
difficulties with various DBD::Pg errors. What version of DBD::Pg are 
you using? The latest versions (as of a couple months ago) of DBD::Pg do 
not work correctly with OME. My lab uses v1.32 successfully with two OME 
installations (on Debian boxes). For convenience, I have placed a copy 
online at:
    http://skyking.microscopy.wisc.edu/curtis/DBD-Pg-1.32.tar.gz

-Curtis

McCaughey, Michael J wrote:

> Trying again with a fresh checkout of OME and a new install of pgsql, 
> I've got another error installing.  This is from 
> CoreDatabaseTablesTask.log
>
> SUCCESS Adding constraints to CLASS "OME::Configuration::Variable"
> ERROR Adding constraints to ST "Experimenter" -- OUTPUT: "DBD::Pg::db 
> do failed:
>  ERROR:  constraint 
> "@Experimenter.module_execution->OME::ModuleExecution" for r
> elation "experimenters" already exists at 
> /home/mrmike/OME/src/perl2/OME/Databas
> e/PostgresDelegate.pm line 726.
>
> Got me. Anyone here seen this before?
>
> Mike
>
>
>
> Michael J. MCaughey, PhD
> Molecular Physiology and Biophysics
> U9203 MRBIII
> 6-6175
>


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