[ome-users] OME XML export and import

gerhard bi1825 at fh-weihenstephan.de
Sat Sep 24 14:22:41 BST 2005


Josiah Johnston wrote:
>
> On Sep 21, 2005, at 5:02 AM, gerhard wrote:
> ...
>> Thanks very much,
>> so there's is no way to do an independent import of an OME-XML file.
>>  So what happens if I create an OME-XML file with an writer (lets say
>> from any image format). I can't leave the <ExperimenterID> blank. So I
>> have to fill the <ExperementerID> with an ID that exists on the machine?
>>
>
> I poked around a bit, looking for a workable solution. The problem is
> worse than I thought. Right now I'm considering this a severe bug. I
> made a listing for it:
>     http://bugs.openmicroscopy.org.uk/show_bug.cgi?id=580
>
> I tried to CC you, but learned you aren't registered on bugzilla. Not
> with this email anyway.
>
> I don't have more time to work on this today. I have to compile a
> report for a meeting tomorrow.
>
> As a temporary work-around, if you fill in the ExperimenterID with the
> LSID of your experimenter on the machine you are importing into, then
> you should be able to see things. If you want to be clean, you should
> also change the GroupID.
>
> The easier temporary solution is to either
>
>     a) make yourself the super user on the local machine by updating
> the configuration table to the DB ID
> select * from experimenters;
>     # Find your account and its id from the output, then
> update configuration set value='31' where name='super_user';
>
>     b) turn off access controls by updating the configuration table
> update configuration set value='0' where name='super_user';
>
> If you are already the super user, then the reason you can't see the
> images in your search results is you are filtering to only images that
> you own. If you change the Owner search field from the default to
> "all" then you'll be able to see all the images in the DB. Assuming
> you are the super user.
>
> -Josiah
>
>
Thanks very much,
after turning off the access control I can see them but in some images I
can't see the thumb. There's only a point. Could it be that there is a
problem importing  more pictures in one OME XML.
I also recognized that there is no convertion back from OME-XML to the
original image file. Is something planned in this way?



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