[ome-users] OME XML export and import
Josiah Johnston
siah at nih.gov
Thu Sep 22 20:05:35 BST 2005
On Sep 21, 2005, at 5:02 AM, gerhard wrote:
...
> Thanks very much,
> so there's is no way to do an independent import of an OME-XML file.
> So what happens if I create an OME-XML file with an writer (lets say
> from any image format). I can't leave the <ExperimenterID> blank. So I
> have to fill the <ExperementerID> with an ID that exists on the
> machine?
>
I poked around a bit, looking for a workable solution. The problem is
worse than I thought. Right now I'm considering this a severe bug. I
made a listing for it:
http://bugs.openmicroscopy.org.uk/show_bug.cgi?id=580
I tried to CC you, but learned you aren't registered on bugzilla. Not
with this email anyway.
I don't have more time to work on this today. I have to compile a
report for a meeting tomorrow.
As a temporary work-around, if you fill in the ExperimenterID with the
LSID of your experimenter on the machine you are importing into, then
you should be able to see things. If you want to be clean, you should
also change the GroupID.
The easier temporary solution is to either
a) make yourself the super user on the local machine by updating the
configuration table to the DB ID
select * from experimenters;
# Find your account and its id from the output, then
update configuration set value='31' where name='super_user';
b) turn off access controls by updating the configuration table
update configuration set value='0' where name='super_user';
If you are already the super user, then the reason you can't see the
images in your search results is you are filtering to only images that
you own. If you change the Owner search field from the default to "all"
then you'll be able to see all the images in the DB. Assuming you are
the super user.
-Josiah
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