[ome-users] Assign Instrument

[Josiah Johnston]

P.S. I wrote it against CVS-HEAD. I don't know if it will work against  
the 2.4 release. It also expects some changes I made to the Web code.
I advise updating from CVS before playing with it.

-Josiah

On Oct 21, 2005, at 6:33 PM, Josiah Johnston wrote:

> Currently there is no good way of doing bulk annotation in the web  
> interface. I have advocated for this feature in the past, but failed  
> to outline a solid use case. Lacking that, it got dropped. Now that  
> the request comes from a biologist who uses the system (e.g. you), it  
> will certainly be added to the to-do list for the Web UI.
>
> The closest piece of software we currently have for this is the  
> spreadsheet importer. I twiddled with Ilya's Excel client, the Web UI,  
> and the spreadsheet importer today. It's easy to use, and directions  
> are included.
>
> Tell me what you think.
>
> You can also download it at:
> 	http://cvs.openmicroscopy.org.uk/horde/chora/browse.php? 
> f=OME%2Fsrc%2FExcel%2F
>
> -Josiah
>
> <imageAnnotate.xls>
>
>
> On Oct 21, 2005, at 4:50 AM, Olivier Renaud wrote:
>
>> Dear all,
>>
>> I come back to you because I didn't get any answer to two of my  
>> questions in a previous email.
>> My question concern the way to assign the same Instrument, Objective  
>> etc... to a serie of images. Now, I have to do it individually for  
>> each picture. The way I am working with OME is the following. I  
>> acquire stacks of pictures with my favorite microscope (in general  
>> acquisition is for half a day). I am acquiring a lot of data. Then, I  
>> import these data to OME. But it's really important to attach to each  
>> dataset the way I did the acquisition (microscope type, objective  
>> etc). In general all the data that I acquired during one session has  
>> been taken using the same Instrument (most of the time the same  
>> objective too). So it would be very usefull to be able to assign the  
>> same Instrument to several dataset (without doing it individually).  
>> Is it actually possible? Do you plan to develop this?
>>
>> My second question is: Is there any way to add information to an  
>> Instrument after the creation? When I create an Instrument I have to  
>> fill a form (magnification, NA etc), but sometimes I don't have all  
>> the information right now. So I would like to call back the  
>> instrument and fill the missing information (for example the Serial  
>> Number). Is it possible?
>>
>> Thanks,
>>
>> Olivier
>>
>> --
>> Olivier RENAUD, PhD
>> Automation Project
>> Plateforme d'Imagerie Dynamique
>> Institut Pasteur
>> 25-28, rue du Dr. Roux
>> 75015 Paris
>> France
>>
>> Tel.: +33 (0)1 45 68 84 97
>> Fax: 01 45 68 89 49
>> email: orenaud at pasteur.fr
>>
>> http://www.pfid.org/AUTOMATION
>>
>>
>>
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users