[ome-users] matlab version

[Anh Vu]

Hi! I tried the instructions within the email and downloaded the
newest CVS version and make modification to the ld file, but when i
tried to install, it gave me an error at the testing stage during
Matlab perl api configuration. A standard installation without the
optional perl module setup installed and worked just fine.

This is the error message from within PerlModuleTask.log
*********************************************************************************************************
----------------------------
 Optional Perl Module Setup
----------------------------

(All verbose information logged in /var/tmp/OME/install/PerlModuleTask.log)


MATLAB Perl API configuration:
 Install MATLAB Perl API?: no
   Config MATLAB for dev?: no

Are these values correct ? [y/n]: n
Install analysis engine interface to MATLAB ? [y/n]: y
The user which MATLAB should be run under [avu]:
Path to MATLAB installation [/usr/local/matlab]:
Path to MATLAB binary [/usr/local/bin/matlab]:
Configure MATLAB Perl API for developers? [y/n]: y
Path to OME's matlab src files [/home/avu/OME/src/matlab]:
"

TESTING MODULE -- su -l avu -c 'make test '
FAILURE -- OUTPUT: "Makefile out-of-date with respect to Makefile.PL
 Cleaning current config before rebuilding Makefile...
 make -f Makefile.old clean > /dev/null 2>&1 || /bin/sh -c true
 /usr/bin/perl Makefile.PL "avu" "/usr/local/matlab"
 You must run the makefile as root to pass it a matlab_user at
MatlabInfo.pl line 58.
 Matlab Vers:
 Matlab Arch:
 Matlab Home:
 Include:
 Lib:
 Lib Path:

 Could not open '../../OME.pm': No such file or directory at
/usr/lib/perl5/5.8.3/ExtUtils/MM_Unix.pm line 3079.
 Checking if your kit is complete...
 Looks good
 make: *** [Makefile] Error 2
"
*********************************************************************************************************

Thanks!
-Anh
                   
On 7/22/05, T. J. Macura <tm289 at cam.ac.uk> wrote:
> Hi Anh,
> 
> I looked back to the list archive and saw the message you wrote on Jun
> 14th.
> Sorry I didn't get back to you sooner, I was very busy then and didn't
> have spare time to help users. Your email fell through the cracks.
> 
> In fact, now I am on vacation (for 7 days) in Wyoming USA enjoying
> Teton National Forest (near Yellowstone). Hiking, cycling, and
> white-water rafting.
> I hope I can make it up to you.
> 
> Last week I installed OME from CVS on RH Fedora Core 3.  I was able to
> get the MatlabHandler to work, but only after lots of tweeking.
> This necessitated some changes to the installer. So please try to get
> OME from CVS and let me know how it works with importing the Matlab
> Modules.
> 
> One thing I had to do (and you probably will have to do as well) is to
> modify ld.so.conf and run /sbin/ldconfig.
> Here is the contents of my /etc/ld.so.conf
> [tmacur1 at ome2 ~]$ cat /etc/ld.so.conf
> include ld.so.conf.d/*.conf
> /usr/lib/
> /usr/local/lib
> /usr/bin/MATLAB7SP2/bin/glnx86
> /usr/X11R6/lib
> 
> You probably need to change the MATLAB line. You see /usr/local/* etc?
> I added those by hand. Those directories must be put before the MATLAB
> directory so default system libraries (and not system libraries that
> come with MATLAB) are used during linking.
> 
> If you have problems with the Module Import once more, please send me
> the error messages and I will get back to you promptly.
> 
> Tom
> 
> > I'm running OME 2.4.0 on Fedora Core 3 with kernel version 2.6.5. I
> > also have matlab R14 running on the server. I have written some matlab
> > scripts that perform identification for a given input image and
> > outputs some statistical data for that image and I am trying to
> > intergrate those scripts into OME so that I can run the analysis and
> > store the statistical data into the OME database.
> >
> > -Anh
> >
> 
> 
> On Jul 21, 2005, at 12:07 PM, Anh Vu wrote:
> 
> > I also have problem with the matlabhandler trying to get it to work
> > with OME. Whenever I try to import a matlab module it would fail and
> > complains about the matlabhandler, so could anyone help me on that?
> > Any suggestion as to what I should do to get it working? I'm using the
> > very early release of OME version 2.3.0 btw. I have some basic
> > knowledge in Perl, so I can try to modify the code, but then I can't
> > narrow down where the problem is.
> >
> > Anh
> >
> 
>