[ome-users] Makefile out-of-date with respect to Makefile.PL

[Ilya Goldberg]

Anh, thank you very very much for taking the time to try this out and 
being patient with us.  Users like you who are willing to go out on a 
limb pave the path for everyone else.
Thanks!
-Ilya

On Aug 5, 2005, at 5:10 PM, Anh Vu wrote:

> This time it works, the installation goes through flawlessly. :-)
> I'll do some testing to see how it goes.
>
> Anh
>
> On 8/5/05, T. J. Macura <tm289 at cam.ac.uk> wrote:
>> This file belongs to src/perl2/OME/Install/PerlModuleTask.pm
>>
>> please put it there and see if it works.
>> I really hope it works now. The fix before wasn't actually changing 
>> the
>> Makefile time-stamp. This fix copies the Matlab directory and 
>> preserves
>> time stamps.
>>
>> Also, for debugging purposes, the Matlab Install Tmp directory isn't
>> removed (changed to /var/tmp/OME/install/Matlab). If it fails please 
>> do
>> ls -lT there (capital T shows timing down to the second, which we 
>> need)
>>
>>
>>
>>
>>
>> On Aug 5, 2005, at 2:24 PM, Anh Vu wrote:
>>
>>> this is the content of /var/tmp/OME sometimes between installation 
>>> and
>>> after it fails for the testing stage during installation.
>>>
>>> total 20
>>> drwxrwsr-x   4 avu ome 4096 Aug  5 11:06 Matlab
>>> drwxrwsr-x   3 ome ome 4096 Jul 23 00:43 install
>>> drwxrwsr-x  18 ome ome 4096 Jul 22 23:56 update
>>> drwxrwsr-x   2 ome ome 4096 Jul 22 23:19 lock
>>> drwxrwsr-x   2 ome ome 4096 Jul 22 23:19 sessions
>>> [avu at batch2112b OME]$ ls -lt
>>> total 16
>>> drwxrwsr-x   3 ome ome 4096 Jul 23 00:43 install
>>> drwxrwsr-x  18 ome ome 4096 Jul 22 23:56 update
>>> drwxrwsr-x   2 ome ome 4096 Jul 22 23:19 lock
>>> drwxrwsr-x   2 ome ome 4096 Jul 22 23:19 sessions
>>>
>>> and here is the content of /var/tmp/OME/Matlab for the brief moment
>>> that it is present during installation.
>>>
>>> total 108
>>> -rw-rw-r--  1 avu ome  3255 Aug  5 11:09 Makefile.PL
>>> -rw-rw-r--  1 avu ome  7089 Aug  5 11:09 MatlabInfo.pl
>>> -rw-rw-r--  1 avu ome   189 Aug  5 11:09 typemap
>>> -rw-rw-r--  1 avu ome   146 Aug  5 11:09 Changes
>>> drwxrwsr-x  2 avu ome  4096 Aug  5 11:09 CVS
>>> -rw-rw-r--  1 avu ome    57 Aug  5 11:09 MANIFEST
>>> -rw-rw-r--  1 avu ome 31827 Aug  5 11:09 Matlab.xs
>>> -rw-rw-r--  1 avu ome 26423 Aug  5 11:09 Makefile.old
>>> -rw-rw-r--  1 avu ome 14492 Aug  5 11:09 Matlab.pm
>>> -rw-rw-r--  1 avu ome  2578 Aug  5 11:09 test.pl
>>>
>>>
>>> On 8/5/05, T. J. Macura <tm289 at cam.ac.uk> wrote:
>>>> Dear Anh,
>>>>
>>>> As you can see below, the Vers/Arch/Home lines are transposed. There
>>>> was a transliteration problem that I fixed.
>>>> However this probably doesn't affect you because the lib and lib 
>>>> path
>>>> lines are correct.
>>>>
>>>>>  Matlab Vers: glnx86
>>>>>  Matlab Arch: /usr/local/matlab
>>>>>  Matlab Home: 7.0.4.352
>>>>>  Include:  -I/usr/local/matlab/extern/include
>>>>>  Lib:      -L/usr/local/matlab/bin/glnx86 -lmx -leng -lut -lmat
>>>>> -licudata -licui
>>>>>                                      18n -licuuc -lustdio -lz
>>>>>  Lib Path: /usr/local/matlab/bin/glnx86
>>>>
>>>> The way the Matlab-OME connector Test works is that
>>>> (src/perl2/OME/Matlab) is copied to a new temporary directory
>>>> (/var/tmp/OME/Matlab) whose ownership is set to the 'Matlab User'.
>>>> This
>>>> copying step is necessary because the 'Matlab User' might not have
>>>> execute permissions in the folder where the OME distribution is
>>>> installed from.
>>>>
>>>> Then the perl script /src/perl2/OME/Matlab is run by the 'Matlab
>>>> User'.
>>>> This script is run through make (i.e. make test) because make sets
>>>> various important environmental variables (e.g. LD_LIBRARY_PATH).
>>>>
>>>> I suspect that during the copying process on your machine, 
>>>> "Makefile"
>>>> is copied before "Makefile.PL". I added logic in the installer to
>>>> update 'Makefile' time-stamp to always be after Makefile.PL 
>>>> regardless
>>>> of the order they were copied over in.
>>>>
>>>> Please checkout from CVS and try it out,
>>>> If the Matlab Module Test fails again please do ls -lT for
>>>> /var/tmp/OME/Matlab
>>>>
>>>> Tom
>>>>
>>>>
>>> _______________________________________________
>>> ome-users mailing list
>>> ome-users at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>
>>
>>
>>
>>
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