[ome-devel] Slidebook sld file open error in Fiji

[Sebastien Besson (Staff)]

Hi Neil,

for recent SlideBook files, a native reader is developed and maintained
by 3i [1] which is recognized by Bio-Formats.
In Fiji, 3i also maintains a dedicated update site that you might want to
activate in order to open the file. See the 3i support page for more information [2].

Best,
Sebastien


[1] http://docs.openmicroscopy.org/bio-formats/5.7.3/formats/3i-slidebook.html
[2] https://www.intelligent-imaging.com/technical-answers

On 9 Feb 2018, at 16:15, Anthony, Neil <nantho2 at emory.edu<mailto:nantho2 at emory.edu>> wrote:

Hi all, I hope the data treats you well.

I can't seem to get my slidebook file open with BF in Fiji.  I get the below error.  I've added Bioformats to my update site list and made sure all is up to date.  I'll also post this to the ImageJ list too, in case I have the wrong direction.

Here is the sld file for reference:
https://www.amazon.com/clouddrive/share/WBCXFTxSfyR4w2087RexdSYa8RJ8Eteg0S8q1lWfH3a

Any pointers are much appreciated.  Please let me know if you need anything further from me to figure things out.

Thanks
Neil

(Fiji Is Just) ImageJ 2.0.0-rc-65/1.51s; Java 1.8.0_66 [64-bit]; Windows 10 10.0; 263MB of 392934MB (<1%)

java.lang.ArrayIndexOutOfBoundsException: 0
    at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:558)
    at loci.formats.FormatReader.setId(FormatReader.java:1397)
    at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:499)
    at loci.plugins.in.ImportProcess.execute(ImportProcess.java:142)
    at loci.plugins.in.Importer.showDialogs(Importer.java:140)
    at loci.plugins.in.Importer.run(Importer.java:76)
    at loci.plugins.LociImporter.run(LociImporter.java:78)
    at ij.IJ.runUserPlugIn(IJ.java:221)
    at ij.IJ.runPlugIn(IJ.java:185)
    at ij.Executer.runCommand(Executer.java:137)
    at ij.Executer.run(Executer.java:66)
    at java.lang.Thread.run(Thread.java:745)



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