[ome-devel] x-ray crystallography images

[Munro, Ian]

Hello

I can’t comment specifically on your modality. However, we have used the OME to handle other modalities that don’t fit the standard 5-D OME model using the modulo
approach described at http://www.openmicroscopy.org/site/support/ome-model/developers/6d-7d-and-8d-storage.html.

Possibly of particular relevance ,from what you say,  we handled OPT data by using this to introduce an extra Angular dimension.
This was written as ModuloAlongZ .

You should be able to see how this looks when viewed using default OME tools at https://cisbic.bioinformatics.ic.ac.uk/omero/webclient/?show=image-119558
If you change the Z-slider you can see the  result.

Best Wishes


Ian






On 30 Jan 2017, at 05:44, major seitan <major.seitan at gmail.com<mailto:major.seitan at gmail.com>> wrote:

I am writing as I would like to provide a pull request to support for x-ray spectrographic formats ADSC and CDF in the form of java readers and writers.  Are there any coding conventions, policies or processes that one should be aware of.  I have experienced some difficulty mapping the bio-formats metadata model to the needs to of x-ray images as there are a few concepts that are specific to x-ray spectrography such as rotation angles and light sources.  Is there any someone whole can provide suggestion to complete the mapping of metadata.

 Thanks
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