[ome-devel] BD pathway ratiometric images

[Balaji Ramalingam (Staff)]

Hi,

Thank you for reporting your issue.
It would be great if you could upload your sample files to our QA server,
https://www.openmicroscopy.org/qa2/qa/upload/

This would help us troubleshoot your issue in better detail.

Best,
Balaji


__________________

Mr Balaji Ramalingam

Software Developer

OME Team

College of Life Sciences

University of Dundee

From: Akos Gerencser <agerencser at buckinstitute.org<mailto:agerencser at buckinstitute.org>>
Reply-To: OME External Developer List <ome-devel at lists.openmicroscopy.org.uk<mailto:ome-devel at lists.openmicroscopy.org.uk>>
Date: Thursday, 3 March 2016 09:08
To: "ome-devel at lists.openmicroscopy.org.uk<mailto:ome-devel at lists.openmicroscopy.org.uk>" <ome-devel at lists.openmicroscopy.org.uk<mailto:ome-devel at lists.openmicroscopy.org.uk>>
Subject: [ome-devel] BD pathway ratiometric images

Hi,

I'm attempting to open a BD Pathway data set using bio-formats 5.1.8. The data set has ratiometric channels that are saved as "* - n*.tif" and "* - d*.tif" files under the same channel name.
The BDReader reads about the double number of time points for this channel, the first half are the numerator (*n*.tif) channel, the other half is blank. Looking the BDReader.java code it appears that only loading of the n*.tif files is coded.
Does anyone have experience with opening such recordings?
Best,
   Akos




Akos Gerencser MD. Ph.D.
Assistant Director of the Morphology and Imaging Core
Assistant Research Professor
-------------------------
Buck Institute for Research on Aging
8001 Redwood blvd. Novato, CA, 94945 | T: (415)-209-2273 | F: (415)-209-2235

Founder, Image Analyst Software
43 Nova Lane  Novato, CA, 94945 | T: (415)-233-7467 | www.imageanalyst.net


The University of Dundee is a registered Scottish Charity, No: SC015096
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