[ome-devel] Automatically attach txt files during upload

[Kai Schleicher]

Hi Will,

thanks so much for your quick response!

The files are beeing created on a DeltaVision OMX Blaze in SI mode for 
super resolution using the OMX software on a windows machine.

Using Softworx, the super-resolution image is reconstructed from the raw 
data and then the different channels are aligned.

With this procedure, I end up with several files, for example:

 1. 20150601_Beadswell4_4ch_1516_SI_001.dv
 2. 20150601_Beadswell4_4ch_1516_SI_001.log
 3. 20150601_Beadswell4_4ch_1516_SI_001_SIR.dv
 4. 20150601_Beadswell4_4ch_1516_SI_001_SIR_ALX.dv
 5. 20150601_Beadswell4_4ch_1516_SI_001_SIR_ALX_log.txt
 6. 20150601_Beadswell4_4ch_1516_SI_001_SIR_log.txt
 7. 20150601_Beadswell4_4ch_1516_SI_001_task.sh.joblog

here, SIR = reconstructed image, and
ALX= camera alignment done

If there is anything else you need, don't hesitate to ask.

Cheers,
Kai



On 02.06.2015 09:05, William Moore wrote:
> Hi Kai,
>
> In order for additional files to be included as part of an image 
> import, they need to be recognised by Bio-Formats as "companion files" 
> that are associated with that image.
>
> In the case of Deltavision images, Bio-Formats should automatically 
> recognise any acquisition and deconvolution log files that are 
> generated by Softworx.
> If you're finding that this is not happening for you, please let us 
> know the names of the files and how they are being created.
>
>  Regards,
>
>    Will.
>
>
> On 2 Jun 2015, at 07:48, Kai Schleicher <kai.schleicher at unibas.ch 
> <mailto:kai.schleicher at unibas.ch>> wrote:
>
>> Hi,
>>
>> Is it possible to automatically attach a *.txt file of the same name 
>> as the image file to the image during upload?
>> This *.txt file could for example be a log file that's automatically 
>> generated during aquisition when using Softworx.
>>
>> Thanks and cheers,
>> Kai
>> -- 
>> Kai Schleicher, PhD | Postdoctoral Fellow in Light Microscopy | Biozentrum, University of Basel | Klingelbergstrasse 50/70 | CH-4056 Basel
>> Phone: +41 61 267 22 50 |kai.schleicher at unibas.ch  |www.biozentrum.unibas.ch  |www.microscopynetwork.unibas.ch
>> _______________________________________________
>> ome-devel mailing list
>> ome-devel at lists.openmicroscopy.org.uk 
>> <mailto:ome-devel at lists.openmicroscopy.org.uk>
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>

-- 
Kai Schleicher, PhD | Postdoctoral Fellow in Light Microscopy | Biozentrum, University of Basel | Klingelbergstrasse 50/70 | CH-4056 Basel
Phone: +41 61 267 22 50 | kai.schleicher at unibas.ch | www.biozentrum.unibas.ch | www.microscopynetwork.unibas.ch

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