[ome-devel] Hypercube out of memory

[Christophe TREFOIS]

Hi Sébastien,

What is the unit?

And, what’s the default on the server side?

Thank you for your help,

Dr Christophe Trefois, Dipl.-Ing.
Technical Specialist / Post-Doc

UNIVERSITÉ DU LUXEMBOURG

LUXEMBOURG CENTRE FOR SYSTEMS BIOMEIDINCE
Campus Belval | House of Biomedicine
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> On 09 Feb 2015, at 12:31, Sebastien Besson (Staff) <s.besson at dundee.ac.uk> wrote:
> 
> 
> The University of Dundee is a registered Scottish Charity, No: SC015096
> 
> From: "Sebastien Besson (Staff)" <s.besson at dundee.ac.uk>
> To: OME-devel OME <ome-devel at lists.openmicroscopy.org.uk>
> Subject: Re: [ome-devel] Hypercube out of memory
> Date: 9 Feb 2015 12:31:46 CET
> 
> 
> Hi Christophe,
> 
> you should be abele to set any value for MessageSizeMax via an ice.config file.
> 
> See  the corresponding line in the ice.config file included in the OMERO.matlab:
> https://github.com/openmicroscopy/openmicroscopy/blob/v.5.0.7/etc/ice.config#L123 <https://github.com/openmicroscopy/openmicroscopy/blob/v.5.0.7/etc/ice.config#L123>
> 
> Let us know if this does not work,
> Sebastien
> 
> On 9 Feb 2015, at 11:14, Christophe TREFOIS <christophe.trefois at uni.lu <mailto:christophe.trefois at uni.lu>> wrote:
> 
>> Dear all,
>> 
>> I tried the example in the OMERO Matlab doc to load a hypercube from a 1GB tiff file
>> 
>> I used the following tutorial: http://www.openmicroscopy.org/site/support/omero5/developers/Matlab.html <http://www.openmicroscopy.org/site/support/omero5/developers/Matlab.html>
>> 
>> I get the following error when trying to “getHypercube”
>> 
>> Java exception occurred:
>> Ice.UnknownLocalException
>>     unknown = "Ice::MemoryLimitException
>>                Ice.MemoryLimitException
>>                    reason = "requested 1424673822 bytes, maximum allowed is 67108864 bytes (see Ice.MessageSizeMax)”
>> 
>> Is it possible to increase the MessageSizeMax or is it not advised and if so, how could I load my hypercube into Matlab anyway?
>> 
>> Best,
>> Dr Christophe Trefois, Dipl.-Ing.
>> Technical Specialist / Post-Doc
>> 
>> UNIVERSITÉ DU LUXEMBOURG
>> 
>> LUXEMBOURG CENTRE FOR SYSTEMS BIOMEIDINCE
>> Campus Belval | House of Biomedicine
>> 7, avenue des Hauts-Fourneaux
>> L-4362 Esch-sur-Alzette
>> T: +352 46 66 44 6124
>> F: +352 46 66 44 6949
>> http://www.uni.lu/lcsb <http://www.uni.lu/lcsb>
>>  <https://www.facebook.com/trefex>  <https://twitter.com/Trefex>  <https://plus.google.com/+ChristopheTrefois/>  <https://www.linkedin.com/in/trefoischristophe>  <http://skype:Trefex?call>
>> 
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>> This message is confidential and may contain privileged information.
>> It is intended for the named recipient only.
>> If you receive it in error please notify me and permanently delete the original message and any copies.
>> ----
>> 
>> 
>> _______________________________________________
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> 
> Dr Sébastien Besson
> Open Microscopy Environment / Harvard Medical School
> Wellcome Trust Centre for Gene Regulation and Expression,
> College of Life Sciences, University of Dundee, Dow Street,
> Dundee DD1 5EH Scotland UK   Tel: (01382) 386364
> 
> 
> 
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