<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Sébastien,<div class=""><br class=""></div><div class="">What is the unit?</div><div class=""><br class=""></div><div class="">And, what’s the default on the server side?</div><div class=""><br class=""></div><div class="">Thank you for your help,</div><div class=""><br class=""><div class="">
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<span style="font-weight: bold; color: rgb(61, 59, 59); display: inline;" class="">Dr Christophe Trefois, Dipl.-Ing.</span>
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<br class=""><div><blockquote type="cite" class=""><div class="">On 09 Feb 2015, at 12:31, Sebastien Besson (Staff) <<a href="mailto:s.besson@dundee.ac.uk" class="">s.besson@dundee.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><br class="">The University of Dundee is a registered Scottish Charity, No: SC015096<br class=""><br class=""><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">From: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">"Sebastien Besson (Staff)" <<a href="mailto:s.besson@dundee.ac.uk" class="">s.besson@dundee.ac.uk</a>><br class=""></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">To: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">OME-devel OME <<a href="mailto:ome-devel@lists.openmicroscopy.org.uk" class="">ome-devel@lists.openmicroscopy.org.uk</a>><br class=""></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">Subject: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class=""><b class="">Re: [ome-devel] Hypercube out of memory</b><br class=""></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">Date: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">9 Feb 2015 12:31:46 CET<br class=""></span></div><br class=""><br class=""><meta http-equiv="Content-Type" content="text/html charset=windows-1252" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Christophe,<div class=""><br class=""></div><div class="">you should be abele to set any value for MessageSizeMax via an ice.config file.</div><div class=""><br class=""></div><div class="">See the corresponding line in the ice.config file included in the OMERO.matlab:</div><div class=""><a href="https://github.com/openmicroscopy/openmicroscopy/blob/v.5.0.7/etc/ice.config#L123" class="">https://github.com/openmicroscopy/openmicroscopy/blob/v.5.0.7/etc/ice.config#L123</a></div><div class=""><br class=""></div><div class="">Let us know if this does not work,</div><div class="">Sebastien</div><div class=""><br class=""><div class=""><div class="">On 9 Feb 2015, at 11:14, Christophe TREFOIS <<a href="mailto:christophe.trefois@uni.lu" class="">christophe.trefois@uni.lu</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite" class=""><meta http-equiv="Content-Type" content="text/html charset=utf-8" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Dear all,<div class=""><br class=""></div><div class="">I tried the example in the OMERO Matlab doc to load a hypercube from a 1GB tiff file</div><div class=""><br class=""></div><div class="">I used the following tutorial: <a href="http://www.openmicroscopy.org/site/support/omero5/developers/Matlab.html" class="">http://www.openmicroscopy.org/site/support/omero5/developers/Matlab.html</a></div><div class=""><br class=""></div><div class="">I get the following error when trying to “getHypercube”</div><div class=""><br class=""></div><div class=""><div class="">Java exception occurred:</div><div class="">Ice.UnknownLocalException</div><div class=""> unknown = "Ice::MemoryLimitException</div><div class=""> Ice.MemoryLimitException</div><div class=""> reason = "requested 1424673822 bytes, maximum allowed is 67108864 bytes (see Ice.MessageSizeMax)”</div><div class=""><br class=""></div><div class="">Is it possible to increase the MessageSizeMax or is it not advised and if so, how could I load my hypercube into Matlab anyway?</div><div class=""><br class=""></div><div class="">Best,</div><div class="">
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<br class=""></div></div>_______________________________________________<br class="">ome-devel mailing list<br class=""><a href="mailto:ome-devel@lists.openmicroscopy.org.uk" class="">ome-devel@lists.openmicroscopy.org.uk</a><br class=""><a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel</a><br class=""></blockquote></div><br class=""><div class="">
<span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px;"><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; border-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-stroke-width: 0px;"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; " class=""><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; border-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-stroke-width: 0px;"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; " class=""><div class="">Dr Sébastien Besson</div><div class="">Open Microscopy Environment / Harvard Medical School</div><div class="">Wellcome Trust Centre for Gene Regulation and Expression,</div><div class="">College of Life Sciences, University of Dundee, Dow Street,</div><div class="">Dundee DD1 5EH Scotland UK Tel: (01382) 386364</div></div></span></div></span></span>
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