[ome-devel] Data Publication with OMERO

[Jason Swedlow]

Dear All-

There are always lots of questions about publishing data with OMERO.  Here's a new example:

The Carazo Salas Lab (http://www.gen.cam.ac.uk/research-groups/carazo-salas) has published a new paper by Graml et al in Dev Cell:

http://www.sciencedirect.com/science/article/pii/S1534580714005917

that shows an HCS screen in S. pombe for effects of microtubules on cell shape through the cell cycle.  All the data are published with OMERO at

http://smc.sysgro.org/babel/omero/Htscape/

and of course linked to the central S. pombe database, http://www.pombase.org<http://www.pombase.org/>/.

Other examples of genome HCS studies published with OMERO are at:

http://jcb-dataviewer.rupress.org/?view=hcs

and published small molecule screens are at:

http://lincs.hms.harvard.edu/db/

It might be time for us to define reusable annotation structures that people can use for genes, small molecules etc to make these use cases even easier.

Congrats to all in the Carazo Salas lab on a very cool paper!

Cheers,

Jason

--------------------
Centre for Gene Regulation & Expression | Open Microscopy Environment | University of Dundee

Phone:  +44 (0) 1382 385819
email: j.swedlow at dundee.ac.uk<mailto:j.swedlow at dundee.ac.uk>

Web: http://www.lifesci.dundee.ac.uk/people/jason-swedlow
Open Microscopy Environment: http://openmicroscopy.org<http://openmicroscopy.org/>


The University of Dundee is a registered Scottish Charity, No: SC015096
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