<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;">
<div>Dear All-</div>
<div><br>
</div>
<div>There are always lots of questions about publishing data with OMERO. Here’s a new example:</div>
<div><br>
</div>
<div>
<div>The Carazo Salas Lab (<a href="http://www.gen.cam.ac.uk/research-groups/carazo-salas">http://www.gen.cam.ac.uk/research-groups/carazo-salas</a>) has published a new paper by Graml et al in Dev Cell:</div>
<div><br>
</div>
<div><a href="http://www.sciencedirect.com/science/article/pii/S1534580714005917">http://www.sciencedirect.com/science/article/pii/S1534580714005917</a></div>
<div><br>
</div>
<div>that shows an HCS screen in S. pombe for effects of microtubules on cell shape through the cell cycle. All the data are published with OMERO at</div>
<div><br>
</div>
<div><a href="http://smc.sysgro.org/babel/omero/Htscape">http://smc.sysgro.org/babel/omero/Htscape</a>/</div>
<div><br>
</div>
<div>and of course linked to the central S. pombe database, <a href="http://www.pombase.org/">http://www.pombase.org</a>/.</div>
</div>
<div><br>
</div>
<div>Other examples of genome HCS studies published with OMERO are at:</div>
<div><br>
</div>
<div><a href="http://jcb-dataviewer.rupress.org/?view=hcs">http://jcb-dataviewer.rupress.org/?view=hcs</a></div>
<div><br>
</div>
<div>and published small molecule screens are at:</div>
<div><br>
</div>
<div><a href="http://lincs.hms.harvard.edu/db">http://lincs.hms.harvard.edu/db</a>/</div>
<div><br>
</div>
<div>It might be time for us to define reusable annotation structures that people can use for genes, small molecules etc to make these use cases even easier.</div>
<div><br>
</div>
<div>Congrats to all in the Carazo Salas lab on a very cool paper!</div>
<div><br>
</div>
<div>Cheers,</div>
<div><br>
</div>
<div>Jason</div>
<div><br>
</div>
<div>
<div>
<div>
<p class="MsoNormal" style="margin: 0in 0in 0.0001pt; color: rgb(40, 40, 40);"><span style="color: black; font-size: 12px;">--------------------</span></p>
<div>
<p class="MsoNormal" style="margin: 0in 0in 0.0001pt; color: rgb(40, 40, 40);"><span style="font-size: 12px;"><span style="color: black;">Centre for Gene Regulation & Expression | Open Microscopy Environment | University of Dundee </span><span style="color: black;"></span></span></p>
<p class="MsoNormal" style="margin: 0in 0in 0.0001pt; color: rgb(40, 40, 40);"><span style="color: black; font-size: 12px;"> </span></p>
<p class="MsoNormal" style="margin: 0in 0in 0.0001pt; color: rgb(40, 40, 40);"><span style="font-size: 12px;"><span style="color: black;">Phone: +44 (0) 1382 385819 </span><span style="color: black;"></span></span></p>
<p class="MsoNormal" style="margin: 0in 0in 0.0001pt; color: rgb(40, 40, 40);"><span style="font-size: 12px;"><span style="color: black;">email: <a href="mailto:j.swedlow@dundee.ac.uk" target="_blank" style="color: rgb(149, 79, 114);"><span style="color: blue;">j.swedlow@dundee.ac.uk</span></a></span><span style="color: black;"></span></span></p>
<p class="MsoNormal" style="margin: 0in 0in 0.0001pt; color: rgb(40, 40, 40);"><span style="font-size: 12px;"><span style="color: black;"> </span><span style="color: black;"></span></span></p>
<p class="MsoNormal" style="margin: 0in 0in 0.0001pt; color: rgb(40, 40, 40);"><span style="font-size: 12px;"><span style="color: black;">Web: </span><span style="color: black;"></span><span style="color: rgb(0, 0, 0);"><a href="http://www.lifesci.dundee.ac.uk/people/jason-swedlow">http://www.lifesci.dundee.ac.uk/people/jason-swedlow</a> </span></span></p>
<p class="MsoNormal" style="margin: 0in 0in 0.0001pt; color: rgb(40, 40, 40);"><span style="font-size: 12px;"><span style="color: black;">Open Microscopy Environment: <a href="http://openmicroscopy.org/" target="_blank" style="color: rgb(149, 79, 114);"><span style="color: blue;">http://openmicroscopy.org</span></a></span></span></p>
</div>
</div>
<div><br>
</div>
</div>
</div>
<br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
</body>
</html>