[ome-devel] Woolz reader/writer

[Bill Hill]

Melissa,

Yes close it please when you're ready.

Cheers,
Bill


> Hi Bill,
>
>> I think I've merged and fixed conflicts OK. It seems
>> to build (using both ant & mvn) and run OK again for me now
>>
>> I know you can find this stuff from git, but the following
>> notes on what I did might be useful:
>
> Looks good, thank you.  Just to confirm, can I then close this pull
> request:
>
> https://github.com/openmicroscopy/bioformats/pull/663
>
> so that this is the one we'll review for inclusion:
>
> https://github.com/openmicroscopy/bioformats/pull/747
>
> Regards,
> -Melissa
>
> On Fri, Oct 18, 2013 at 04:49:47PM +0100, Bill Hill wrote:
>> Melissa,
>>
>> I think I've merged and fixed conflicts OK. It seems
>> to build (using both ant & mvn) and run OK again for me now
>>
>> I know you can find this stuff from git, but the following
>> notes on what I did might be useful:
>>
>> add dir components/bio-formats/src/loci/formats/out
>>
>> add components/bio-formats/src/loci/formats/in/WlzReader.java
>> add components/bio-formats/src/loci/formats/out/WlzWriter.java
>> add components/bio-formats/src/loci/formats/services/WlzService.java
>> add components/bio-formats/src/loci/formats/services/WlzServiceImpl.java
>>
>> mod components/scifio/src/loci/formats/readers.txt
>> mod components/bio-formats/build.properties
>> mod components/bio-formats/pom.xml b/components/bio-formats/pom.xml
>> mod components/loci-legacy/src/loci/common/services/services.properties
>> mod components/scifio/src/loci/formats/writers.txt
>>
>> Obviously to run something like:
>>
>> ./tools/showinf fruit.wlz
>>
>> you need your LD_LIBRAY_PATH environment variable set, eg (for
>> t/csh):
>>
>> setenv BFHOME   /home/bill/Build/src/bioformats
>> setenv LD_LIBRARY_PATH $BFHOME/lib:$LD_LIBRARY_PATH
>>
>> Cheers,
>> Bill
>>
>>> Hi Bill,
>>>
>>>> Does anyone know the status of the Woolz reader/writer in
>>>> bioformats. Is this incorporated into the OMERO5 build now?
>>>> If not can anyone tell if the system is waiting on me to do
>>>> something?
>>>>
>>>> https://github.com/openmicroscopy/bioformats/pull/663
>>>
>>> Sorry, this just needs some final review and testing from us - we were
>>> just a bit distracted by the 4.4.9 release.
>>>
>>> The only thing you need to do with that PR at the moment is to merge the
>>> latest 'develop' branch from the openmicroscopy/bioformats repository
>>> into your 'develop' branch, resolve any conflicts, and then push the
>>> branch back to Github.  If you would rather not have to deal with that,
>>> then I can close PR #663 and open a new one with the same commits, so
>>> that I own the PR and can take care of any conflict resolution.
>>>
>>> Regards,
>>> -Melissa
>>>
>>> On Fri, Oct 18, 2013 at 03:28:55PM +0100, Bill Hill wrote:
>>>> Does anyone know the status of the Woolz reader/writer in
>>>> bioformats. Is this incorporated into the OMERO5 build now?
>>>> If not can anyone tell if the system is waiting on me to do
>>>> something?
>>>>
>>>> https://github.com/openmicroscopy/bioformats/pull/663
>>>>
>>>>
>>>> I see:
>>>>
>>>>
>>>> Build
>>>>      1078
>>>> State
>>>>      Passed
>>>> Finished
>>>>      about a month ago
>>>> Duration
>>>>      1 hr 20 min 44 sec
>>>> Commit
>>>>      69ffe88 (develop)
>>>> Pull Request
>>>>      #663 woolz add bioformats
>>>> Author
>>>>      Bill Hill
>>>> Committer
>>>>      Bill Hill
>>>> Message
>>>>      Fixed JWlz.jar dependency path.
>>>>
>>>> Cheers,
>>>> Bill
>>>> --
>>>> Bill Hill                              : http://www.hgu.mrc.ac.uk
>>>> MRC Human Genetics Unit                : http://www.emouseatlas.org
>>>> MRC IGMM, University of Edinburgh      : Bill.Hill at igmm.ed.ac.uk
>>>> Western General Hospital               : +44-131-3322471x2119
>>>> Crewe Road, Edinburgh EH4 2XU, UK.     : +44-131-4678456
>>>>
>>>> The University of Edinburgh is a charitable body, registered in
>>>> Scotland, with registration number SC005336.
>>>>
>>>> _______________________________________________
>>>> ome-devel mailing list
>>>> ome-devel at lists.openmicroscopy.org.uk
>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>>
>>
>> --
>> Bill Hill                              : http://www.hgu.mrc.ac.uk
>> MRC Human Genetics Unit                : http://www.emouseatlas.org
>> MRC IGMM, University of Edinburgh      : Bill.Hill at igmm.ed.ac.uk
>> Western General Hospital               : +44-131-3322471x2119
>> Crewe Road, Edinburgh EH4 2XU, UK.     : +44-131-4678456
>>
>> The University of Edinburgh is a charitable body, registered in
>> Scotland, with registration number SC005336.
>>
>

-- 
Bill Hill                              : http://www.hgu.mrc.ac.uk
MRC Human Genetics Unit                : http://www.emouseatlas.org
MRC IGMM, University of Edinburgh      : Bill.Hill at igmm.ed.ac.uk
Western General Hospital               : +44-131-3322471x2119
Crewe Road, Edinburgh EH4 2XU, UK.     : +44-131-4678456

The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.