[ome-devel] error message with OMERO importer

Martin Spitaler m.spitaler at imperial.ac.uk
Thu Oct 17 13:28:59 BST 2013


I've tried to install the OMERO plugin in a FIJI installation and get 
the error message at the bottom. To make sure I have the latest version 
of the plugin I then wanted to go to the DOWNLOAD page on 
openmicroscopy.org, but the link on the OMERO page 
(http://www.openmicroscopy.org/site/products/omero) under GETTING 
STARTED is broken. Please check and fix,

Martin

(Fiji Is Just) ImageJ 1.48a; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 29MB 
of 12241MB (<1%)

java.lang.RuntimeException: Failed to intialize the Container in plugin 
mode.
     at 
org.openmicroscopy.shoola.env.Container.startupInPluginMode(Container.java:493)
     at 
org.openmicroscopy.shoola.env.Container.startupInPluginMode(Container.java:421)
     at org.openmicroscopy.shoola.MainIJPlugin.run(MainIJPlugin.java:247)
     at ij.IJ.runUserPlugIn(IJ.java:196)
     at ij.IJ.runPlugIn(IJ.java:160)
     at ij.Executer.runCommand(Executer.java:128)
     at ij.Executer.run(Executer.java:64)
     at java.lang.Thread.run(Thread.java:662)
Caused by: org.openmicroscopy.shoola.env.init.StartupException: Unable 
to load Container configuration
     at 
org.openmicroscopy.shoola.env.init.ContainerConfigInit.execute(ContainerConfigInit.java:188)
     at 
org.openmicroscopy.shoola.env.init.Initializer.doInit(Initializer.java:276)
     at 
org.openmicroscopy.shoola.env.Container.startupInPluginMode(Container.java:478)
     ... 7 more
Caused by: org.openmicroscopy.shoola.env.config.ConfigException: An 
error occurred while attempting to process 
C:\PROGRA~4\Fiji\plugins\config\container.xml. 
(C:\PROGRA~4\Fiji\plugins\config\container.xml (The system cannot find 
the path specified))
     at org.openmicroscopy.shoola.env.config.Parser.rethrow(Parser.java:105)
     at org.openmicroscopy.shoola.env.config.Parser.parse(Parser.java:173)
     at 
org.openmicroscopy.shoola.env.config.RegistryFactory.fillFromFile(RegistryFactory.java:102)
     at 
org.openmicroscopy.shoola.env.init.ContainerConfigInit.execute(ContainerConfigInit.java:139)
     ... 9 more
Caused by: java.io.FileNotFoundException: 
C:\PROGRA~4\Fiji\plugins\config\container.xml (The system cannot find 
the path specified)
     at java.io.FileInputStream.open(Native Method)
     at java.io.FileInputStream.<init>(FileInputStream.java:106)
     at java.io.FileInputStream.<init>(FileInputStream.java:66)
     at 
org.openmicroscopy.shoola.util.file.IOUtil.readConfigFile(IOUtil.java:267)
     at org.openmicroscopy.shoola.env.config.Parser.parse(Parser.java:156)
     ... 11 more




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