[ome-devel] OME ROI ?

[Hadrien Mary]

I miss time currently. Mostly I am not familiar with IJ build system...
It's not a critical bug for me so it can wait as long as it has been
reported.

Best,


--
Hadrien Mary

Ph.D student in Biology
Tournier-Gachet Team
CNRS - LBCMCP - UMR 5088

Université de Toulouse - Bât. 4R3B1
118, route de Narbonne - 31062 Toulouse


On Thu, Nov 14, 2013 at 7:19 PM, Roger Leigh <r.leigh at dundee.ac.uk> wrote:

> On 14/11/2013 17:56, Hadrien Mary wrote:
>
>> Thank you for answering.
>>
>> I am actually refering to both case :-) I would like to be able to open
>> an OME Tiff file, then add some ROIs with ROI Manager and then save ROIs
>> on the OME XML stored in the OME Tiff file (if I could avoid to rewrite
>> the entire Tiff and write only the OME XML in Tiff file it would be
>> awesome as well !).
>>
>
> I have opened ticket #11695 to track this; you should get copied on any
> changes to the ticket.
>
> Updating the metadata only in the OME TIFF is certainly possible, but
> this isn't exposed through the plugin.  The OME-XML can certainly be
> replaced using the standard libtiff API to update the
> TIFFTAG_IMAGEDESCRIPTION tag if you wanted to do this yourself, and you
> could probably also do this using the OMETiffWriter API so long as you
> don't replace the image planes (but this isn't necessarily advisable!).
>
>
> Regards,
> Roger
>
>
> --
> Dr Roger Leigh -- Open Microscopy Environment
> Wellcome Trust Centre for Gene Regulation and Expression,
> College of Life Sciences, University of Dundee, Dow Street,
> Dundee DD1 5EH Scotland UK   Tel: (01382) 386364
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
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