[ome-devel] importing Hamamatsu-HIS files SOLVED

[Grabmayr, Heinrich]

Dear List,

We ran into a problem when we opened a Hamamatsu HIS file from an Orca Flash 4 camera. Each frame was opened in a separate window.
The solution:
By checking the checkbox "Concatenate series when compatible" all frames are opened in a single window.
Thanks to Curtis!

@Roger:
The importer works fine, it was just a problem oft he user :) If you need any image/video sample files, please let me know.

Thanks for your help!

Uli Klessinger


Von: ctrueden.wisc at gmail.com<mailto:ctrueden.wisc at gmail.com> [mailto:ctrueden.wisc at gmail.com] Im Auftrag von Curtis Rueden
Gesendet: Dienstag, 14. Mai 2013 15:16
An: Grabmayr, Heinrich
Cc: ome-devel at lists.openmicroscopy.org.uk<mailto:ome-devel at lists.openmicroscopy.org.uk>
Betreff: Re: [ome-devel] importing Hamamatsu-HIS files

Hi Heinrich,

> every frame is opened as a new series, that is in a new window

In addition to Roger's comments, as a workaround for the time being, has your colleague tried checking the "Concatenate series when compatible" option?

Regards,
Curtis

On Tue, May 14, 2013 at 1:26 AM, Grabmayr, Heinrich <Heinrich.Grabmayr at ph.tum.de<mailto:Heinrich.Grabmayr at ph.tum.de>> wrote:
Dear List,

A colleague of mine is streaming movies from a Hamamatsu camera directly on hdd. When he uses the bio formats importer (ImageJ-plugin) to open these movies, every frame is opened as a new series, that is in a new window - when he clicks the option to open only one series, he is asked which one of series 1-N, N>>1 he wants to open. He was not yet able to open it ina window with a slider.
Is this expected behaviour or a bug?

thanks
   Heinrich


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