[ome-devel] DeltaVision import

Wood, Christopher CJW at stowers.org
Tue Jan 22 20:29:26 GMT 2013 

Hello,

I have some files from a DeltaVision OMX that are not importing with the
command line importer (on the server) or with a python that essentially
calls the command line importer. Insight and omero.Importer work file
importing the files. Everything is omero 4.4.5.

I saw an issue like this on the ome github, but it looked like it didn't
make it into the 4.4.5 release. Any ideas?

Thanks,

Chris,


Here is the error log:

2013-01-22 14:27:59,544 6229       [      main] DEBUG
ormats.importer.cli.LoggingImportMonitor  - INTERNAL_EXCEPTION:
/OMERO/AutoImport/Microscopy/cjw/OMX2/Jay/1-8-12/diploid_spb_mps3gfp_017.dv
java.lang.RuntimeException: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at
ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
:2134)
        at
ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:359)
        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:541)
        at
ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289)
        at
ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java
:143)
        at
ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:
462)
Caused by: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
        at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcce
ssorImpl.java:39)
        at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstru
ctorAccessorImpl.java:27)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
        at java.lang.Class.newInstance0(Class.java:355)
        at java.lang.Class.newInstance(Class.java:308)
        at
IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStr
eam.java:2142)
        at IceInternal.BasicStream.throwException(BasicStream.java:1564)
        at IceInternal.Outgoing.throwUserException(Outgoing.java:443)
        at
omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:324)
        at
omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
va:984)
        at
omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
va:957)
        at
ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
:2118)
        ... 5 more


2013-01-22 14:27:59,546 6231       [      main] ERROR
ome.formats.importer.cli.ErrorHandler  - INTERNAL_EXCEPTION:
/OMERO/AutoImport/Microscopy/cjw/OMX2/Jay/1-8-12/diploid_spb_mps3gfp_017.dv
java.lang.RuntimeException: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at
ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
:2134)
        at
ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:359)
        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:541)
        at
ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289)
        at
ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java
:143)
        at
ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:
462)
Caused by: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
        at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcce
ssorImpl.java:39)
        at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstru
ctorAccessorImpl.java:27)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
        at java.lang.Class.newInstance0(Class.java:355)
        at java.lang.Class.newInstance(Class.java:308)
        at
IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStr
eam.java:2142)
        at IceInternal.BasicStream.throwException(BasicStream.java:1564)
        at IceInternal.Outgoing.throwUserException(Outgoing.java:443)
        at
omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:324)
        at
omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
va:984)
        at
omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
va:957)
        at
ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
:2118)
        ... 5 more


2013-01-22 14:27:59,548 6233       [      main] DEBUG
ome.formats.OMEROMetadataStoreClient  - Creating root!

2013-01-22 14:27:59,610 6295       [      main] DEBUG
ormats.importer.cli.LoggingImportMonitor  - INTERNAL_EXCEPTION:
/OMERO/AutoImport/Microscopy/cjw/OMX2/Jay/1-8-12/diploid_spb_mps3gfp_017.dv
java.lang.RuntimeException: java.lang.RuntimeException:
omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at
ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:292)
        at
ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java
:143)
        at
ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:
462)
Caused by: java.lang.RuntimeException: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at
ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
:2134)
        at
ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:359)
        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:541)
        at
ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289)
        ... 2 more
Caused by: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
        at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcce
ssorImpl.java:39)
        at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstru
ctorAccessorImpl.java:27)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
        at java.lang.Class.newInstance0(Class.java:355)
        at java.lang.Class.newInstance(Class.java:308)
        at
IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStr
eam.java:2142)
        at IceInternal.BasicStream.throwException(BasicStream.java:1564)
        at IceInternal.Outgoing.throwUserException(Outgoing.java:443)
        at
omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:324)
        at
omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
va:984)
        at
omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
va:957)
        at
ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
:2118)
        ... 5 more


2013-01-22 14:27:59,612 6297       [      main] ERROR
ome.formats.importer.cli.ErrorHandler  - INTERNAL_EXCEPTION:
/OMERO/AutoImport/Microscopy/cjw/OMX2/Jay/1-8-12/diploid_spb_mps3gfp_017.dv
java.lang.RuntimeException: java.lang.RuntimeException:
omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at
ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:292)
        at
ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java
:143)
        at
ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:
462)
Caused by: java.lang.RuntimeException: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at
ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
:2134)
        at
ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:359)
        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:541)
        at
ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:289)
        ... 2 more
Caused by: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing
reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference.
                                at
ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549
)
                                at
ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237)
                                at
sun.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInt
erceptor.java:111)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(T
ransactionInterceptor.java:108)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilte
r.java:241)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy65.doWork(Unknown Source)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:406)
                                at
ome.services.util.Executor$Impl.execute(Executor.java:350)
                                at
ome.services.throttling.Adapter.run(Adapter.java:51)
                                at
ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThr
ottlingStrategy.java:89)
                                at
ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.
java:164)
                                at
ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStore
I.java:232)
                                at
sun.reflect.GeneratedMethodAccessor1900.invoke(Unknown Source)
                                at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImp
l.java:25)
                                at
java.lang.reflect.Method.invoke(Method.java:597)
                                at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(Aop
Utils.java:307)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoin
t(ReflectiveMethodInvocation.java:183)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:150)
                                at
omero.cmd.CallContext.invoke(CallContext.java:59)
                                at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(Reflec
tiveMethodInvocation.java:172)
                                at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopPr
oxy.java:202)
                                at $Proxy100.updateReferences_async(Unknown
Source)
                                at
omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:1
15)
                                at
omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:24
9)
                                at
omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:426)
                                at IceInternal.Incoming.invoke(Incoming.java:159)
                                at
Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
                                at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
                                at Ice.ConnectionI.message(ConnectionI.java:1163)
                                at IceInternal.ThreadPool.run(ThreadPool.java:302)
                                at
IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                                at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
                                at java.lang.Thread.run(Thread.java:662)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for Objective:10612(null) -->
omero.model.ObjectiveSettings:0(ome.model.acquisition.ObjectiveSettings:Has
h_984040926) reference."
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
        at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcce
ssorImpl.java:39)
        at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstru
ctorAccessorImpl.java:27)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
        at java.lang.Class.newInstance0(Class.java:355)
        at java.lang.Class.newInstance(Class.java:308)
        at
IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStr
eam.java:2142)
        at IceInternal.BasicStream.throwException(BasicStream.java:1564)
        at IceInternal.Outgoing.throwUserException(Outgoing.java:443)
        at
omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:324)
        at
omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
va:984)
        at
omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.ja
va:957)
        at
ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java
:2118)
        ... 5 more

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