[ome-devel] Fwd: Wrong channel colors for DeltaVision images

[Melissa Linkert]

Hi Carnë,

> I have some images (dv files) taken at a DeltaVision microscope with
> softWoRx software. This images are multi-channel (red and green
> channels). When I open the images on ImageJ, the lookup tables are
> reversed (the green channel is using the red lookup table and
> vice-versa). I do not know if this is a problem on the ImageJ plugin
> or in the Bioformats library. I understand that this does not affect
> any analysis as long I know they are opened reverse. But when the
> images from each channel are very similar, having the colors reversed
> can catch users by surprise and may take a long time to find the
> mistake.
> 
> Is there a bug tracker where to report this? I can supply an image to
> reproduce the problem.

As mentioned on the other thread, you can report bugs (and attach any
necessary files) by logging in to:

https://trac.openmicroscopy.org.uk/ome

with the username "omero" and password "omero".

Regards,
-Melissa

On Tue, Jun 12, 2012 at 03:31:15PM +0100, Carnë Draug wrote:
> Hi
> 
> I tried to send this e-mail for the bioformats mailing list but got an
> automated reply about being discontinued and that I should be using
> the ome mailing lists instead. I had obtained the e-mail address from
> the instructions on this page
> http://www.openmicroscopy.org/site/support/faq/bio-formats so you may
> want to update that one as well.
> 
> ---------- Forwarded message ----------
> From: Carnë Draug <carandraug+dev at gmail.com>
> Date: 12 June 2012 15:07
> Subject: Wrong channel colors for DeltaVision images
> To: bioformats at loci.wisc.edu
> 
> 
> Hi everyone,
> 
> I have some images (dv files) taken at a DeltaVision microscope with
> softWoRx software. This images are multi-channel (red and green
> channels). When I open the images on ImageJ, the lookup tables are
> reversed (the green channel is using the red lookup table and
> vice-versa). I do not know if this is a problem on the ImageJ plugin
> or in the Bioformats library. I understand that this does not affect
> any analysis as long I know they are opened reverse. But when the
> images from each channel are very similar, having the colors reversed
> can catch users by surprise and may take a long time to find the
> mistake.
> 
> Is there a bug tracker where to report this? I can supply an image to
> reproduce the problem.
> 
> I'm using the latest FIJI for Debian with the LOCI plugin revision
> b4b47ad, release 4.3-dev
> 
> Thank you in advance,
> Carnë
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