[ome-devel] OMERO scripts...

[Josh Moore]

On Jan 17, 2011, at 12:53 PM, Jerome Avondo wrote:
> Hi Josh,

Hey Jerome,

> I don't seem to have a Processor-0.log... Could it be I haven't started it or something? 


It may well be missing one of its Python dependencies. Can you also look in or send master.err from the same directory? Until we get the line:


> Server:     Processor-0                    inactive (disabled)



saying "active", scripts definitely won't work.
~Josh.


> Did try getting nodes up manually but did say there where already running...
> 
> And here is the output from diagnostic...
> 
> ================================================================================
> OMERO Diagnostics Beta4.2.1-r8614-Beta4.2-b41
> ================================================================================
> 
> 
> Commands:   java -version                  1.6.0     (/usr/bin/java)
> Commands:   python -V                      2.6.2     (/usr/bin/python)
> Commands:   icegridnode --version          3.3.1     (/usr/bin/icegridnode)
> Commands:   icegridadmin --version         3.3.1     (/usr/bin/icegridadmin)
> Commands:   psql --version                 8.4.4     (/usr/bin/psql)
> 
> Server:     icegridnode                    running
> Server:     Blitz-0                        active (pid = 6747, enabled)
> Server:     DropBox                        inactive (disabled)
> Server:     FileServer                     active (pid = 6779, enabled)
> Server:     Indexer-0                      active (pid = 6781, enabled)
> Server:     MonitorServer                  inactive (disabled)
> Server:     OMERO.Glacier2                 active (pid = 6783, enabled)
> Server:     OMERO.IceStorm                 active (pid = 6785, enabled)
> Server:     Processor-0                    inactive (disabled)
> Server:     Repository-1                   error: node `repo' couldn't be reache                    d:
> the node is not active
> Server:     Tables-0                       inactive (disabled)
> Server:     TestDropBox                    inactive (enabled)
> 
> Log dir:    /opt/OMERO.server-Beta-4.2.1/var/log exists
> 
> Log files:  Blitz-0.log                    138.0 MB      errors=147  warnings=30                    3
> Log files:  DropBox.log                    4.0 KB        errors=12   warnings=0                     
> Log files:  FileServer.log                 1.0 KB
> Log files:  Indexer-0.log                  1.0 MB        errors=2    warnings=71                    
> Log files:  MonitorServer.log              5.0 KB        errors=6    warnings=0                     
> Log files:  OMEROweb.log                   13.0 KB       errors=1    warnings=0                     
> Log files:  Processor-0.log                n/a
> Log files:  Tables-0.log                   n/a
> Log files:  TestDropBox.log                n/a
> Log files:  master.err                     11.0 KB
> Log files:  master.out                     0.0 KB
> Log files:  node1.err                      3.0 MB
> Log files:  node1.out                      0.0 KB
> Log files:  node2.err                      3.0 MB
> Log files:  node2.out                      0.0 KB
> Log files:  Total size                     145.66 MB
> 
> Parsing Blitz-0.log:[line:24] => Server restarted <=
> Parsing Blitz-0.log:[line:724411] => Server restarted <=
> Parsing Blitz-0.log:[line:724678] => Server restarted <=
> Parsing Blitz-0.log:[line:728931] => Server restarted <=
> Parsing Blitz-0.log:[line:733730] => Server restarted <=
> Parsing Blitz-0.log:[line:735476] => Server restarted <=
> 
> Environment:OMERO_HOME=(unset)
> Environment:OMERO_NODE=(unset)
> Environment:OMERO_MASTER=(unset)
> Environment:PATH=/usr/kerberos/sbin:/usr/kerberos/bin:/sbin:/bin:/usr/sbin:/usr/                    bin
> Environment:ICE_HOME=(unset)
> Environment:LD_LIBRARY_PATH=(unset)
> Environment:DYLD_LIBRARY_PATH=(unset)
> 
> OMERO data dir: '/OMERO'        Exists? True    Is writable? True
> OMERO.web status... [NOT STARTED]
> ================================================================================
> 
> 
> 
> Thanks,
> 
> Jerome.
> 
> 
>> Subject: Re: [ome-devel] OMERO scripts...
>> From: josh at glencoesoftware.com
>> Date: Wed, 12 Jan 2011 16:36:12 +0100
>> CC: ome-devel at lists.openmicroscopy.org.uk
>> To: jeromeavondo at msn.com
>> 
>> Hi Jerome,
>> 
>> On Jan 12, 2011, at 2:21 PM, Jerome Avondo wrote:
>>> Hi all,
>>> 
>>> Firstly happy new year to everyone!! :)
>> 
>> Same to you!
>> 
>>> I am having a few issues in trying the OMERO.script service. 
>>> I am trying to install and run the "Edit_Descriptions.py" example.
>>> 
>>> I am working with the admin scripts, so I did the following:
>>> 
>>> I created a new folder called jic_scripts under: lib/scripts/omero/jic_scripts
>>> I copied in the "Edit_Descriptions.py" file.
>>> 
>>> Then in OMERO.insight the script is indeed visible, ie: shows up in the drop down menu, but when I try and run it I get the following error:
>>> 
>>> "Cannot load the script: 1414
>>> Error: No Processor available
>>> Please contact your administrator"
>>> 
>>> And this is all on a 4.2.1 omero install.
>>> 
>>> Any pearls of wisdom to help me out?
>> 
>> Could you send us var/log/Processor-0.log as well as var/log/Blitz-0.log? The output of bin/omero admin diagnostics would also be helpful.
>> 
>> Thanks,
>> ~Josh.
>> 
>>> Thanks for your time,
>>> 
>>> Jerome.
>> 
>