[ome-devel] BD Pathway

Shawn Garbett shawn.p.garbett at vanderbilt.edu
Fri Feb 19 15:57:08 GMT 2010


In using the BD Pathway importer I wrote I've noticed a few improvements that would really help our lab. First of all, the http://trac.openmicroscopy.org.uk/omero/wiki/WorkPlan/HCSData plan, shows these nice plate formats. Do I need to update the importer code to include this information? If so, what's a good example?

Also in the importer, I copied over a line: 'MetadataTools.setDefaultCreationDate(store, id, i)' when saving each image in a stack. Does this pull the file creation date and store it in the metadata? This is the best indicator of the time of an image for us.

Shawn Garbett <shawn.p.garbett at vanderbilt.edu>
Vanderbilt Cancer Biology
220 Pierce Ave, PRB 715AA
Nashville, TN 37232
Office: 615.936.1975
Cell: 615.397.8737






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