[ome-devel] Zeiss ZEN

[Rubén Muñoz]

Hi Melissa, 

Permit me to contact you again regarding the Zeiss LSM importer.
I uploaded two different files generated with an offline version of the ZEN software. There seems to be something new in this software: multiple series in one LSM files.

The latest build of loci_tools.jar can import successfully a file with 1 serie: z3time5.lsm

What didn't work was a file containing 2 series of 3 slices, 1 channel, 5 timepoints: 3z2positions5timesteps.lsm

Please let me know if I can help more with testing or data.

java.lang.IllegalArgumentException: 0 must not be null and positive.
	at ome.xml.model.primitives.PositiveInteger.<init>(PositiveInteger.java:41)
	at loci.formats.MetadataTools.populatePixels(MetadataTools.java:150)
	at loci.formats.MetadataTools.populatePixels(MetadataTools.java:95)
	at loci.formats.in.ZeissLSMReader.initFile(ZeissLSMReader.java:414)
	at loci.formats.FormatReader.setId(FormatReader.java:1067)
	at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:433)
	at loci.plugins.in.ImportProcess.execute(ImportProcess.java:137)
	at loci.plugins.in.Importer.showDialogs(Importer.java:125)
	at loci.plugins.in.Importer.run(Importer.java:77)
	at loci.plugins.LociImporter.run(LociImporter.java:77)
	at ij.IJ.runUserPlugIn(IJ.java:189)
	at ij.IJ.runPlugIn(IJ.java:155)
	at ij.Executer.runCommand(Executer.java:147)
	at ij.Executer.run(Executer.java:78)
	at java.lang.Thread.run(Thread.java:637)


Thanks,
Rubén