[ome-devel] Problem with OMERO.importer when using the new OME/2009-09 schema
Dominik Langer
langer at hifo.uzh.ch
Thu Oct 29 12:34:00 GMT 2009
Dear ome-devel list members
I am trying to import an OME-TIFF file (see attachment) into OMERO 4.1
using OMERO.importer. However, the import fails with the Error message
"java.lang.IllegalArgumentException: Invalid series: 0".
- The OME header of the file is according to the newest OME schema
(http://www.openmicroscopy.org/Schemas/OME/2009-09/ome.xsd).
- XML is valid according to http://www.validome.org/xml/validate/
- The OME validator at http://validator.openmicroscopy.org.uk/ tells
that the file is invalid and gives the following error message:
"File schema: No schema found - using
http://www.openmicroscopy.org/Schemas/OME/2008-09 (Standard V1)
* The file is *invalid*.
* The file is an OME-TIFF.
* The file's xml could be parsed.
* The file was not checked for internal consistency.
* The OME-TIFF data appears consistent with the OME-TIFF metadata.
* No custom attributes were found.
Element '{http://www.openmicroscopy.org/Schemas/OME/2009-09}OME': No
matching global declaration available for the validation root."
Now I wonder why the validator says that it does not find the schema. Is
there a mistake in the way I define the use of the new 2009-09 schema in
my XML? This is my OME header of the OME-TIFF file (also see attachment):
<?xml version="1.0" encoding="UTF-8"?><OME
xmlns="http://www.openmicroscopy.org/Schemas/OME/2009-09"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2009-09
http://www.openmicroscopy.org/Schemas/OME/2009-09/ome.xsd"><Image
ID="urn:lsid:hifo.uzh.ch:Image:943704370950:0"><AcquiredDate>1988-04-07T18:39:09</AcquiredDate><Description>Hello
World</Description><Pixels
ID="urn:lsid:hifo.uzh.ch:Pixels:691459359378:0" Type="uint16"
DimensionOrder="XYZTC" SizeC="1" SizeX="256" SizeY="256" SizeZ="1"
SizeT="1"><TiffData></TiffData></Pixels></Image></OME>
Thank you in advance for any help!
Best regards,
Dominik
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