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Dear ome-devel list members<br>
<br>
I am trying to import an OME-TIFF file (see attachment) into OMERO 4.1
using OMERO.importer. However, the import fails with the Error message
"java.lang.IllegalArgumentException: Invalid series: 0".<br>
<br>
- The OME header of the file is according to the newest OME schema
(<a class="moz-txt-link-freetext" href="http://www.openmicroscopy.org/Schemas/OME/2009-09/ome.xsd">http://www.openmicroscopy.org/Schemas/OME/2009-09/ome.xsd</a>).<br>
- XML is valid according to <a class="moz-txt-link-freetext" href="http://www.validome.org/xml/validate/">http://www.validome.org/xml/validate/</a><br>
- The OME validator at <a class="moz-txt-link-freetext" href="http://validator.openmicroscopy.org.uk/">http://validator.openmicroscopy.org.uk/</a> tells
that the file is invalid and gives the following error message:<br>
<br>
"File schema: No schema found - using
<a class="moz-txt-link-freetext" href="http://www.openmicroscopy.org/Schemas/OME/2008-09">http://www.openmicroscopy.org/Schemas/OME/2008-09</a> (Standard V1)
<p> </p>
<ul>
<li> <span>The file is <strong>invalid</strong>. </span> </li>
<li> <span>The file is an OME-TIFF. </span> </li>
<li> <span>The file's xml could be parsed. </span> </li>
<li> <span>The file was not checked for internal consistency. </span>
</li>
<li> <span>The OME-TIFF data appears consistent with the OME-TIFF
metadata. </span> </li>
<li> <span>No custom attributes were found. </span> </li>
</ul>
Element '{<a class="moz-txt-link-freetext" href="http://www.openmicroscopy.org/Schemas/OME/2009-09">http://www.openmicroscopy.org/Schemas/OME/2009-09</a>}OME': No
matching global declaration available for the validation root."<br>
<br>
Now I wonder why the validator says that it does not find the schema.
Is there a mistake in the way I define the use of the new 2009-09
schema in my XML? This is my OME header of the OME-TIFF file (also see
attachment):<br>
<br>
<?xml version="1.0" encoding="UTF-8"?><OME
xmlns=<a class="moz-txt-link-rfc2396E" href="http://www.openmicroscopy.org/Schemas/OME/2009-09">"http://www.openmicroscopy.org/Schemas/OME/2009-09"</a>
xmlns:xsi=<a class="moz-txt-link-rfc2396E" href="http://www.w3.org/2001/XMLSchema-instance">"http://www.w3.org/2001/XMLSchema-instance"</a>
xsi:schemaLocation=<a class="moz-txt-link-rfc2396E" href="http://www.openmicroscopy.org/Schemas/OME/2009-09http://www.openmicroscopy.org/Schemas/OME/2009-09/ome.xsd">"http://www.openmicroscopy.org/Schemas/OME/2009-09
http://www.openmicroscopy.org/Schemas/OME/2009-09/ome.xsd"</a>><Image
ID="urn:lsid:hifo.uzh.ch:Image:943704370950:0"><AcquiredDate>1988-04-07T18:39:09</AcquiredDate><Description>Hello
World</Description><Pixels
ID="urn:lsid:hifo.uzh.ch:Pixels:691459359378:0" Type="uint16"
DimensionOrder="XYZTC" SizeC="1" SizeX="256" SizeY="256" SizeZ="1"
SizeT="1"><TiffData></TiffData></Pixels></Image></OME><br>
<br>
<br>
Thank you in advance for any help!<br>
<br>
Best regards,<br>
Dominik<br>
<br>
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