[ome-devel] JPEG 2000 import Fails

[Curtis Rueden]

Hi Frans,

Sorry for the delay in reply.

This problem is certainly a bug in Bio-Formats rather than OMERO. I tested
in the latest Bio-Formats trunk build and the problem seems to be fixed, so
it will likely be working in the forthcoming release of OMERO Beta 4.0.0.

-Curtis

On Mon, Feb 9, 2009 at 4:46 AM, Cornelissen, Frans [PRDBE] <
FCORNELI at its.jnj.com> wrote:

> Hi,
>
> I'm trying to import JPEG 2000 files in OMERO 3.2
> It fails with the follwong message:
> Any ideas/fixes?
>
> Tx, Regards, frans
>
> java.lang.NullPointerException
>        at
> loci.formats.codec.JPEG2000Codec.decompress(JPEG2000Codec.java:255)
>        at loci.formats.in.ND2Reader.openBytes(ND2Reader.java:129)
>        at loci.formats.ImageReader.openBytes(ImageReader.java:374)
>        at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:165)
>        at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:110)
>        at
> loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:131)
>        at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:204)
>        at
> loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:253)
>        at
> loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:245)
>        at
> loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:229)
>        at
> ome.formats.importer.OMEROWrapper.openPlane2D(OMEROWrapper.java:84)
>        at
> ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:507)
>        at
> ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:432)
>        at
> ome.formats.importer.ImportHandler.importImages(ImportHandler.java:178)
>        at
> ome.formats.importer.ImportHandler.access$0(ImportHandler.java:107)
>        at
> ome.formats.importer.ImportHandler$1.run(ImportHandler.java:88)
>
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>
>
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