[ome-devel] Customising OMERO client software

[Woodbridge, Mark R]

> Did setting ICE_HOME in your environment not work?

Thanks. I didn't know about that one! I actually tried to avoid building
the ICE stuff completely (by having no.ice=true in etc/local.properties)
but that didn't work. It doesn't matter though, because the full build
was successful (if a bit slow) and I won't be running it again.
 
> The newly built jar should be under build/jar/bio-formats.jar. Note:
> if you need a version other than 3935, let us know. OMERO 
> won't work with all version of bio-formats.

I noticed that the importer won't compile with the latest bio-formats.
However, I can easily modify and build 3935 and put it in
lib/repository(?). I was concerned that I would be missing any
OMERO-specific patches though. The filename
(bio-formats-r3935-patched.jar) and the existence of the
components/bioformats-omero implies that you've made some changes? Will
the importer run ok with a vanilla bio-formats library?

Finally, I'm not sure whether this is significant, but whenever I do
upload an image using the importer it appears to complete successfully
but I get the following error logged to the console:

java.sql.SQLException: Column not found: FILEPATH in statement [INSERT
INTO file_table(importID, experimenterID, rowNum, filename, projectID,
datasetID, date, status, filepath)]
	at org.hsqldb.jdbc.Util.sqlException(Unknown Source)
	at org.hsqldb.jdbc.jdbcStatement.fetchResult(Unknown Source)
	at org.hsqldb.jdbc.jdbcStatement.executeUpdate(Unknown Source)
	at ome.formats.importer.HistoryDB.update(HistoryDB.java:350)
	at
ome.formats.importer.HistoryDB.insertFileHistory(HistoryDB.java:311)
	at
ome.formats.importer.ImportHandler.importImages(ImportHandler.java:145)
	at
ome.formats.importer.ImportHandler.access$000(ImportHandler.java:36)
	at
ome.formats.importer.ImportHandler$1.run(ImportHandler.java:87)

Mark.