[ome-devel] new file formats

[Bernd Jagla]

Hello again,

I just found out that the files that the method getGroups receives are of
type Ome::image::server::file. Unfortunately I couldn't find any information
on the path. Also, if I select a path as an import file neither the path
itself nor the files underneath are being used.

Is there any way to get the path of an input file and the paths within that
directory plus the files in a directory underneath?

Thanks,

Bernd

|-----Original Message-----
|From: ome-devel-bounces at lists.openmicroscopy.org.uk [mailto:ome-devel-
|bounces at lists.openmicroscopy.org.uk] On Behalf Of Bernd Jagla
|Sent: Thursday, September 22, 2005 2:12 PM
|To: ome-devel at lists.openmicroscopy.org.uk
|Subject: RE: [ome-devel] new file formats
|
|Hello,
|
|I found one answer:
|In the tests directory there is the ForkedImageImport.pl program with which
|I can test my import functions.
|
|And I want to reformulate one other question, which I guess is more a Perl
|than an OME question:
|I need to get all the directories in the directory of the ".run" file that
|I
|am reading in. For this, I thought to find first the path to the run file,
|and then list all directories underneath. Unfortunately I don't know how to
|do this. Any help is very much appreciated...
|
|Do I have to insert a line to CoreDatabaseTablesTask.pm for my new module
|in
|order to register? And is this all, or do I have to reinstall after???
|
|I know this information is somewhere but I am having a hard time finding
|all
|the bits and peaces....
|
|Thanks again for your kind understanding and help
|
|Bernd
|
||-----Original Message-----
||From: ome-devel-bounces at lists.openmicroscopy.org.uk [mailto:ome-devel-
||bounces at lists.openmicroscopy.org.uk] On Behalf Of Bernd Jagla
||Sent: Thursday, September 22, 2005 11:52 AM
||To: ome-devel at lists.openmicroscopy.org.uk
||Subject: [ome-devel] new file formats
||
||Hello,
||
||Sorry for posting this twice, but I guess it is better to put it in the
|dev
||list...
||
||And I have one more question:
||The ImportEngine is using a variable $filenames, that I believe is a
||IO:File
||object ???, but I don't understand why in the MetamorphHTDFormat.pm (line
||100) a method getFilename can be called, since I can't find this method
||anywhere in IO:File or any inherited package (IO:Handle, IOSeekable).
||
||Thanks, and here is my e-mail from yesterday...
||
|||Hello again,
|||
|||Long time no hear, but I haven't forgotten about my little project of
|||importing INCell files into OME, it's just that it is hard find the time
||to
|||work on it...
|||
|||Anyway, I think by now I understood a little bit the
|MetamorphHTDFormat.pm
|||module and wanted to program my own version for the .run and .frm
|files...
|||How would I go about this?
|||	I want to test the module not through the web-page but rather
|||through the command line. But I don't know how I could do it! Can you
||please
|||give me an example?
|||
|||	How do I register the module in OME without reinstalling?
|||
|||Thanks a lot for your kind help.
|||
|||Best
|||
|||Bernd
|||
||
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