[ome-devel] error while installing OME on mandrake 10.1

[Gaetan Lehmann]

you're right : my home dir haven't got good permission :-)

but Installation still failed at "Import core XML" :-(
CoreDatabaseTablesTask.log ends with :


ERROR LOADING XML FILE "/tmp/OME/src/xml/OMECoreTypes.ome" -- OUTPUT: "500  
Not a SCALAR reference
  at /tmp/OME/src/perl2/OME/Image/Server.pm line 468
         OME::Image::Server::__callOMEIS('OME::Image::Server', 'Method',  
'UploadFile', 'File', '/tmp/OME/src/xml/OMECoreTypes.ome') called at  
/tmp/OME/src/p
erl2/OME/Image/Server.pm line 1050
         OME::Image::Server::uploadFile('OME::Image::Server',  
'/tmp/OME/src/xml/OMECoreTypes.ome') called at  
/tmp/OME/src/perl2/OME/Image/Server/File.pm lin
e 112
         OME::Image::Server::File::upload('OME::Image::Server::File',  
'/tmp/OME/src/xml/OMECoreTypes.ome') called at  
/tmp/OME/src/perl2/OME/Tasks/OMEImport.
pm line 138
         OME::Tasks::OMEImport::importFile('OME::Tasks::OMEImport=HASH(0x952eb00)',  
'/tmp/OME/src/xml/OMECoreTypes.ome', 'NoDuplicates', 1, 'IgnoreAlterTabl
eErrors', 1) called at  
/tmp/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line 814
         eval {...} called at  
/tmp/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line 813
         OME::Install::CoreDatabaseTablesTask::load_xml_core('OME::Session=HASH(0x9530b70)',  
'GLOB(0x8360874)') called at /tmp/OME/src/perl2/OME/Install/Cor
eDatabaseTablesTask.pm line 1067
         OME::Install::CoreDatabaseTablesTask::execute() called at (eval  
171) line 1
         eval 'OME::Install::CoreDatabaseTablesTask::execute()
;' called at ./install.pl line 79
         main::run_tasks() called at ./install.pl line 249
"


... Not really clear for me !!




On Wed, 17 Nov 2004 15:19:59 +0000, Chris Allan <callan at blackcat.ca> wrote:

> On Wed, Nov 17, 2004 at 03:02:53PM +0100, Gaetan Lehmann wrote:
>>
>> Hi,
>>
>> I'm trying to install OME 2.2.1.1 on mandrake 10.1 .
>>
>> Installation failed with the following error :
>>
>> Checking OMEIS repository [SUCCESS].
>> Importing core XML
>>   \__ /home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome [FAILURE].
>>
>>
>> Errors executing task: Error loading XML file
>> "/home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome", see
>> CoreDatabaseTablesTask.log details. at (eval 171) line 1
>>
>>  at ./install.pl line 80
>>         main::run_tasks() called at ./install.pl line 249
>> # Looks like your test died before it could output anything.
>>
>> CoreDatabaseTablesTask.log ends with :
>>
>> ERROR LOADING XML FILE "/home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome"
>> -- OUTPUT: "Cannot find file
>> /home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome at
>> /home/glehmann/tmp/OME/src/perl2/OME/Image/Server.pm line 443."
>>
>> but OMECoreTypes.ome exists and is readable by everybody
>>
>> ll /home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome
>> -rw-r--r--  1 1002 users 31239 nov 17 13:19
>> /home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome
>
> ls -al /home/glehmann
>
> Does your home directory have execute permissions for users other than
> yourself?
>
>>
>>
>>
>> Can someone help me ?
>>
>>
>>
>>
>> Installation notes :
>>
>> + Mandrake 10.1 is packaged with mod_perl 2, so I patched source with  
>> the
>> (really dirty) following commands :
>>
>> find -type f -exec perl -pi -e "s/Apache::Registry/ModPerl::Registry/g"  
>> {}
>> \;
>> find -type f -exec perl -pi -e "s/PerlFreshRestart/#PerlFreshRestart/g"  
>> {}
>> \;
>> find -type f -exec perl -pi -e "s/CGI-Perl/CGI/g" {} \;
>>
>> This seems to work, but perhaps it is the problem.
>>
>> + apache 2.0.50
>> + perl v5.8.5
>> + setting Include in httpd2.conf failed. I set it manually.
>>
>>
>> --
>> Gaetan Lehmann <gaetan.lehmann at jouy.inra.fr>
>> Tel: +33 1 34 65 22 34
>> Biologie du D?veloppement et de la Reproduction
>> INRA de Jouy-en-Josas
>>
>> _______________________________________________
>> ome-devel mailing list
>> ome-devel at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>
>



-- 
Gaetan Lehmann <gaetan.lehmann at jouy.inra.fr>
Tel: +33 1 34 65 22 34
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)