[ome-devel] Error on "Finalizing Database"

Andrew Ehrlich andrew at dairysight.com
Wed Aug 4 13:13:43 BST 2004


I'm installing OME on a Gentoo platform.  After installing all the Perl 
modules and C libraries, install.pl ran as expected until the 
"Finalizing Database" stage, where it returned:

---------------------
Finalizing Database
---------------------

Importing core XML
 \__ /OME/src/xml/OMECoreTypes.ome [FAILURE].


Errors executing task: Error loading XML file 
"/OME/src/xml/OMECoreTypes.ome", see CoreDatabaseTablesTask.log details. 
at (eval 159) line 1

       main::run_tasks() called at install.pl line 208
# Looks like your test died before it could output anything.

The log file reveals:

ERROR LOADING XML FILE "/home/andrew/omedl/OME/src/xml/OMECoreTypes.ome" 
-- OUTPUT: "500 Not a SCALAR ref
erence
        OME::Image::Server::__callOMEIS('OME::Image::Server', 'Method', 
'UploadFile', 'File', '/home/andr
ew/omedl/OME/src/xml/OMECoreTypes.ome') called at 
src/perl2/OME/Image/Server.pm line 1054
        OME::Image::Server::uploadFile('OME::Image::Server', 
'/home/andrew/omedl/OME/src/xml/OMECoreTypes
.ome') called at src/perl2/OME/Image/Server/File.pm line 112
        OME::Image::Server::File::upload('OME::Image::Server::File', 
'/home/andrew/omedl/OME/src/xml/OMEC
oreTypes.ome') called at src/perl2/OME/Tasks/OMEImport.pm line 146
        
OME::Tasks::OMEImport::importFile('OME::Tasks::OMEImport=HASH(0x929dff8)', 
'/home/andrew/omedl/OM
E/src/xml/OMECoreTypes.ome', 'NoDuplicates', 1, 
'IgnoreAlterTableErrors', 1) called at src/perl2/OME/Inst
all/CoreDatabaseTablesTask.pm line 614
        eval {...} called at 
src/perl2/OME/Install/CoreDatabaseTablesTask.pm line 613
        
OME::Install::CoreDatabaseTablesTask::load_xml_core('OME::Session=HASH(0x9284f54)', 
'GLOB(0x8b905
88)') called at src/perl2/OME/Install/CoreDatabaseTablesTask.pm line 828
        OME::Install::CoreDatabaseTablesTask::execute() called at (eval 
159) line 1
        eval 'OME::Install::CoreDatabaseTablesTask::execute()
;' called at install.pl line 81
        main::run_tasks() called at install.pl line 208
"

Any ideas on fixing this?

Thanks for your help,
Andrew


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