[FLIMfit-users] program close when I click Fit Dataset

Mon Mar 19 11:30:35 GMT 2018

Dear Sir,

I am really sorry for the late response due to some healthy problems.
I have just check different parameters, I send you the information you asked me for:

When I open the file, I do not change loading options: Spatial binning 1x1 and Time bins 3116 (4ps/bin)
I open then Channel 3 of the file.

I also keep the mode by default : Integrated Intensity
Once the region is selected, I choose Lifetime > Global fitting : pixel-wise
No. of Threads 32
Algorith Maximum Likelihood

The program crush when I do single exponential fit, bi-exponential fit or more.

And if I try to do it without changing any default parameter, I get the following error :

Out of memory. Type HELP MEMORY for your options.
Error in flim_dll_interface/call_fitting_lib (line 157)
Error in flim_dll_interface/fit (line 192)
Error in flim_fit_controller/fit (line 73)
Error in flim_fit_controller/fit_pushbutton_callback (line 276)
Error in flim_fit_controller>@(varargin)obj.fit_pushbutton_callback(varargin{:}) (line 129)
Error in escaped_callback (line 7)
Error in flim_fit_controller>@(~,~)escaped_callback(@obj.fit_pushbutton_callback) (line 129)

I thank you in advance for all your help!!!!

Sincerely,

Elena

http://www.unejonquillepourcurie.fr<http://curie.fr/fr/003614>

-- María Elena Fernández Sánchez
Institut Curie - Centre de Recherche
Unité Physicochimie Curie UMR 168
Équipe Mécanique et génétique du développement embryonnaire et tumoral
11, rue Pierre et Marie Curie
75005 Paris, France.

tel: 33 (0)1 56 24 64 92
fax: 33 (0)1 40 51 06 36

Lab Activity:
http://umr168.curie.fr/en/Farge-group
________________________________
De : Sean Warren <s.warren at garvan.org.au>
Envoyé : mercredi 14 mars 2018 11:56:21
À : Fernandez-Sanchez Maria Elena
Cc : flimfit-users at lists.openmicroscopy.org.uk
Objet : Re: [FLIMfit-users] program close when I click Fit Dataset

Hi Elana,

Sorry you’re having this issue; could you please let me know what fitting parameters you are using?

Can you perform a single exponential fit or does that fail as well?

Thanks

Sean

Dr. Sean Warren | Research Officer
Invasion and Metastasis
Cancer Division
Garvan Institute of Medical Research
The Kinghorn Cancer Centre, 370 Victoria Street, Darlinghurst, NSW 2010<tel:+442010>

From: Fernandez-Sanchez Maria Elena via FLIMfit-users
Sent: Friday, 9 March, 22:12
Subject: [FLIMfit-users] program close when I click Fit Dataset
To: flimfit-users at lists.openmicroscopy.org.uk

Dear Sir, Madame

I have installed FLIMfit 5.0.3 on my computer to analyse data from FLIM measurements. I have installed also MATLAB R2017b. I can open my files .pt3 and change all parameters I have to change. I have no problem at all to "Fit Selected Decay". But when I try to "Fit Dataset" the program close and send this error message (at the end of the message I have copied the whole error message) :

Access violation detected
Matlab is exiting because of fatal error

Could you please help me to resolve this problem??

I thank you warmly in advance.

Sincerely,

Elena

Starting FLIMfit...
--------------------------
OMERO.matlab Toolbox
5.2.8-ice35-b57
--------------------------
Warning: Invalid file or directory 'C:\Users\verasonics\AppData\Local\FLIMfit_5.
0.3_PCWIN64_MCR_cache\mcrCache9.1\FLIMfi0\OMEROMatlab\libs\guava.jar'.
> In javaclasspath>local_validate_dynamic_path
  In javaclasspath>local_javapath
  In javaclasspath
  In javaaddpath (line 71)
  In loadOmero (line 73)
  In flim_fit_ui (line 164)
  In FLIMfit (line 39)
Warning: Invalid file or directory 'C:\Users\verasonics\AppData\Local\FLIMfit_5.
0.3_PCWIN64_MCR_cache\mcrCache9.1\FLIMfi0\OMEROMatlab\libs\omero_client.jar'.
> In javaclasspath>local_validate_dynamic_path
  In javaclasspath>local_javapath
  In javaclasspath
  In javaaddpath (line 71)
  In loadOmero (line 73)
  In flim_fit_ui (line 164)
  In FLIMfit (line 39)
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in [jar:file:/C:/Program%20Files/MATLAB/MATLAB%20Runtime/v9
1/java/jarext/slf4j/slf4j-log4j12.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/C:/Users/verasonics/AppData/Local/FLIMfit_5.0
.3_PCWIN64_MCR_cache/mcrCache9.1/FLIMfi0/BFMatlab/bioformats_package.jar!/org/sl
f4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.

Error using matlab.graphics.primitive.Patch/set
Invalid or deleted object.

Error in polygonSymbol/updateView (line 231)

Error in impoly>impolyAPI/animateLine (line 556)

Error in iptaddcallback/callbackProcessor (line 147)

Error using pause (line 21)
Error while evaluating Figure WindowButtonMotionFcn

DLL execution time: 1.9509
Total execution time: 52.6098

------------------------------------------------------------------------
          Access violation detected at Fri Mar 09 11:34:54 2018
------------------------------------------------------------------------

Configuration:
  Crash Decoding      : Disabled - No sandbox or build area path
  Crash Mode          : continue (default)
  Current Graphics Driver: Microsoft Corporation GDI Generic Version 1.1.0
  Default Encoding    : windows-1252
  Deployed            : true
  Graphics card 1     : NVIDIA ( 0x10de ) NVIDIA Quadro K620 Version 9.18.13.406
6
  Host Name           : Verasonics
  MATLAB Architecture : win64
  MATLAB Entitlement ID: Unknown
  MATLAB Root         : C:\Program Files\MATLAB\MATLAB Runtime\v91
  MATLAB Version      : 9.1.0.441655 (R2016b)
  OpenGL              : software
  Operating System    : Microsoft Windows 7 Ultimate
  Processor ID        : x86 Family 6 Model 63 Stepping 2, GenuineIntel
  Virtual Machine     : Java 1.7.0_60-b19 with Oracle Corporation Java HotSpot(T
M) 64-Bit Server VM mixed mode
  Window System       : Version 6.1 (Build 7601: Service Pack 1)

Fault Count: 1

Abnormal termination:
Access violation

Register State (from fault):
  RAX = 00000003bee80040  RBX = 00000003bee80040
  RCX = 000000006abff040  RDX = 000000012d800000
  RSP = 00000000a3fefe58  RBP = 00000000d983ad10
  RSI = 0000000544681000  RDI = 0000000416e81000

   R8 = 00000000d983aee0   R9 = 0000000000000000
  R10 = 00000004ec680040  R11 = 0000000000000000
  R12 = 0000000000000000  R13 = fffffffffffffffc
  R14 = 0000000000000000  R15 = 0000000000000001

  RIP = 000007fef7a2c387  EFL = 00010203

   CS = 0033   FS = 0053   GS = 002b

Stack Trace (from fault):
[  0] 0x000007fef7a2c387               C:\Windows\system32\VCRUNTIME140.dll+0005
0055 memmove+00000087
[  1] 0x000007fee22084fe C:\Users\verasonics\AppData\Local\FLIMfit_5.0.3_PCWIN64
_MCR_cache\mcrCache9.1\FLIMfi0\Users\CIMLab\jenkins-slave\workspace\flimfit-rele
ase-win\FLIMfitLibrary\Libraries\FLIMGlobalAnalysis_64.dll+00099582 FLIMGlobalCl
earFit+00088526
[  2] 0x000007fee2206463 C:\Users\verasonics\AppData\Local\FLIMfit_5.0.3_PCWIN64
_MCR_cache\mcrCache9.1\FLIMfi0\Users\CIMLab\jenkins-slave\workspace\flimfit-rele
ase-win\FLIMfitLibrary\Libraries\FLIMGlobalAnalysis_64.dll+00091235 FLIMGlobalCl
earFit+00080179
[  3] 0x000007fee22226bd C:\Users\verasonics\AppData\Local\FLIMfit_5.0.3_PCWIN64
_MCR_cache\mcrCache9.1\FLIMfi0\Users\CIMLab\jenkins-slave\workspace\flimfit-rele
ase-win\FLIMfitLibrary\Libraries\FLIMGlobalAnalysis_64.dll+00206525 FLIMGlobalCl
earFit+00195469
[  4] 0x000007fef797beed                   C:\Windows\system32\ucrtbase.DLL+0044
2093 crt_at_quick_exit+00000125
[  5] 0x00000000779859cd                   C:\Windows\system32\kernel32.dll+0008
8525 BaseThreadInitThunk+00000013
[  6] 0x0000000077aba561                      C:\Windows\SYSTEM32\ntdll.dll+0017
3409 RtlUserThreadStart+00000033

If this problem is reproducible, please submit a Service Request via:
    http://www.mathworks.com/support/contact_us/

A technical support engineer might contact you with further information.

Thank you for your help.** This crash report has been saved to disk as C:\Users\
VERASO~1\AppData\Local\Temp\matlab_crash_dump.7028-1 **

MATLAB is exiting because of fatal error
Press any key to continue . . .

http://www.unejonquillepourcurie.fr<http://curie.fr/fr/003614>

-- María Elena Fernández Sánchez
Institut Curie - Centre de Recherche
Unité Physicochimie Curie UMR 168
Équipe Mécanique et génétique du développement embryonnaire et tumoral
11, rue Pierre et Marie Curie
75005 Paris, France.

tel: 33 (0)1 56 24 64 92
fax: 33 (0)1 40 51 06 36

Lab Activity:
http://umr168.curie.fr/en/Farge-group

NOTICE
Please consider the environment before printing this email. This message and any attachments are intended for the addressee named and may contain legally privileged/confidential/copyright information. If you are not the intended recipient, you should not read, use, disclose, copy or distribute this communication. If you have received this message in error please notify us at once by return email and then delete both messages. We accept no liability for the distribution of viruses or similar in electronic communications. This notice should not be removed.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/flimfit-users/attachments/20180319/2c882d43/attachment-0001.html>