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<span style="mso-ansi-language:EN-US">Dear Sir,</span></p>
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<span style="mso-ansi-language:EN-US"> </span></p>
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<span style="mso-ansi-language:EN-US">I am really sorry for the late response due to some healthy problems.</span></p>
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<span style="mso-ansi-language:EN-US">I have just check different parameters, I send you the information you asked me for:</span></p>
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<span style="mso-ansi-language:EN-US"> </span></p>
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<span style="mso-ansi-language:EN-US">When I open the file, I do not change loading options: Spatial binning 1x1 and Time bins 3116 (4ps/bin)</span></p>
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<span style="mso-ansi-language:EN-US">I open then Channel 3 of the file.</span></p>
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<span style="mso-ansi-language:EN-US"> </span></p>
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<span style="mso-ansi-language:EN-US">I also keep the mode by default : Integrated Intensity</span></p>
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<span style="mso-ansi-language:EN-US">Once the region is selected, I choose Lifetime > Global fitting : pixel-wise</span></p>
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<span style="mso-ansi-language:EN-US">No. of Threads 32</span></p>
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<span style="mso-ansi-language:EN-US">Algorith Maximum Likelihood</span></p>
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<span style="mso-ansi-language:EN-US"> </span></p>
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<span style="mso-ansi-language:EN-US">The program crush when I do single exponential fit, bi-exponential fit or more.
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<span style="mso-ansi-language:EN-US">And if I try to do it without changing any default parameter, I get the following error :</span></p>
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<span style="mso-ansi-language:EN-US">Out of memory. Type HELP MEMORY for your options.<span style="mso-spacerun:yes">
</span></span></p>
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<span style="mso-ansi-language:EN-US">Error in flim_dll_interface/call_fitting_lib (line 157)<span style="mso-spacerun:yes">
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<span style="mso-ansi-language:EN-US">Error in flim_dll_interface/fit (line 192)<span style="mso-spacerun:yes">
</span><span style="mso-spacerun:yes"> </span></span></p>
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<span style="mso-ansi-language:EN-US">Error in flim_fit_controller/fit (line 73)<span style="mso-spacerun:yes">
</span></span></p>
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<span style="mso-ansi-language:EN-US">Error in flim_fit_controller/fit_pushbutton_callback (line 276)<span style="mso-spacerun:yes">
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<span style="mso-ansi-language:EN-US">Error in flim_fit_controller>@(varargin)obj.fit_pushbutton_callback(varargin{:}) (line 129)
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<span style="mso-ansi-language:EN-US">Error in escaped_callback (line 7)<span style="mso-spacerun:yes">
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<span style="mso-ansi-language:EN-US">Error in flim_fit_controller>@(~,~)escaped_callback(@obj.fit_pushbutton_callback) (line 129)</span></p>
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<span style="mso-ansi-language:EN-US"> </span></p>
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<span style="mso-ansi-language:EN-US">I thank you in advance for all your help!!!!</span></p>
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<span style="mso-ansi-language:EN-US"> </span></p>
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<span style="mso-ansi-language:EN-US">Sincerely,</span></p>
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<span style="mso-ansi-language:EN-US"> </span></p>
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<span style="mso-ansi-language:EN-US">Elena</span></p>
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<font size="2" color="#800080" face="Comic Sans MS"><b>-- María Elena Fernández Sánchez<br>
Institut Curie - Centre de Recherche<br>
Unité Physicochimie Curie UMR 168<br>
Équipe Mécanique et génétique du développement embryonnaire et tumoral<br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>De :</b> Sean Warren <s.warren@garvan.org.au><br>
<b>Envoyé :</b> mercredi 14 mars 2018 11:56:21<br>
<b>À :</b> Fernandez-Sanchez Maria Elena<br>
<b>Cc :</b> flimfit-users@lists.openmicroscopy.org.uk<br>
<b>Objet :</b> Re: [FLIMfit-users] program close when I click Fit Dataset</font>
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Hi Elana,<br>
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Sorry you’re having this issue; could you please let me know what fitting parameters you are using?<br>
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Can you perform a single exponential fit or does that fail as well?<br>
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Thanks<br>
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Sean<br>
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<b>Dr. Sean Warren </b>| Research Officer<br>
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Invasion and Metastasis<br>
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Cancer Division<br>
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<b>Garvan Institute of Medical Research </b><br>
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The Kinghorn Cancer Centre,<b> </b>370 Victoria Street, Darlinghurst, NSW <a href="tel:+442010">2010</a><br>
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From: Fernandez-Sanchez Maria Elena via FLIMfit-users<br>
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Sent: Friday, 9 March, 22:12<br>
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Subject: [FLIMfit-users] program close when I click Fit Dataset<br>
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To: flimfit-users@lists.openmicroscopy.org.uk<br>
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Dear Sir, Madame<br>
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I have installed FLIMfit 5.0.3 on my computer to analyse data from FLIM measurements. I have installed also MATLAB R2017b. I can open my files .pt3 and change all parameters I have to change. I have no problem at all to "Fit Selected Decay". But when I try
to "Fit Dataset" the program close and send this error message (at the end of the message I have copied the whole error message) :<br>
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<b>Access violation detected</b><br>
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<b>Matlab</b><b> is exiting because of fatal error</b><br>
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Could you please help me to resolve this problem??<br>
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I thank you warmly in advance.<br>
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Sincerely,<br>
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Elena<br>
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Starting FLIMfit...<br>
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--------------------------<br>
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OMERO.matlab Toolbox<br>
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5.2.8-ice35-b57<br>
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--------------------------<br>
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Warning: Invalid file or directory 'C:\Users\verasonics\AppData\Local\FLIMfit_5.<br>
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0.3_PCWIN64_MCR_cache\mcrCache9.1\FLIMfi0\OMEROMatlab\libs\guava.jar'.<br>
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> In javaclasspath>local_validate_dynamic_path<br>
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In javaclasspath>local_javapath<br>
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In javaclasspath<br>
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In javaaddpath (line 71)<br>
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In loadOmero (line 73)<br>
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Warning: Invalid file or directory 'C:\Users\verasonics\AppData\Local\FLIMfit_5.<br>
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0.3_PCWIN64_MCR_cache\mcrCache9.1\FLIMfi0\OMEROMatlab\libs\omero_client.jar'.<br>
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> In javaclasspath>local_validate_dynamic_path<br>
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In javaclasspath>local_javapath<br>
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In javaclasspath<br>
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In javaaddpath (line 71)<br>
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In flim_fit_ui (line 164)<br>
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In FLIMfit (line 39)<br>
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SLF4J: Class path contains multiple SLF4J bindings.<br>
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SLF4J: Found binding in [jar:file:/C:/Program%20Files/MATLAB/MATLAB%20Runtime/v9<br>
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1/java/jarext/slf4j/slf4j-log4j12.jar!/org/slf4j/impl/StaticLoggerBinder.class]<br>
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SLF4J: Found binding in [jar:file:/C:/Users/verasonics/AppData/Local/FLIMfit_5.0<br>
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.3_PCWIN64_MCR_cache/mcrCache9.1/FLIMfi0/BFMatlab/bioformats_package.jar!/org/sl<br>
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SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.<br>
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Invalid or deleted object.<br>
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Error in iptaddcallback/callbackProcessor (line 147)<br>
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Error using pause (line 21)<br>
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Error while evaluating Figure WindowButtonMotionFcn<br>
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DLL execution time: 1.9509<br>
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Total execution time: 52.6098<br>
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------------------------------------------------------------------------<br>
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Access violation detected at Fri Mar 09 11:34:54 2018<br>
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------------------------------------------------------------------------<br>
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Configuration:<br>
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Crash Decoding : Disabled - No sandbox or build area path<br>
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Crash Mode : continue (default)<br>
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Current Graphics Driver: Microsoft Corporation GDI Generic Version 1.1.0<br>
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Default Encoding : windows-1252<br>
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Deployed : true<br>
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Graphics card 1 : NVIDIA ( 0x10de ) NVIDIA Quadro K620 Version 9.18.13.406<br>
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6<br>
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Host Name : Verasonics<br>
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MATLAB Architecture : win64<br>
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MATLAB Entitlement ID: Unknown<br>
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MATLAB Root : C:\Program Files\MATLAB\MATLAB Runtime\v91<br>
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MATLAB Version : 9.1.0.441655 (R2016b)<br>
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OpenGL : software<br>
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Operating System : Microsoft Windows 7 Ultimate<br>
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Processor ID : x86 Family 6 Model 63 Stepping 2, GenuineIntel<br>
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Virtual Machine : Java 1.7.0_60-b19 with Oracle Corporation Java HotSpot(T<br>
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M) 64-Bit Server VM mixed mode<br>
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Window System : Version 6.1 (Build 7601: Service Pack 1)<br>
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Fault Count: 1<br>
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Abnormal termination:<br>
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Access violation<br>
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Register State (from fault):<br>
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RAX = 00000003bee80040 RBX = 00000003bee80040<br>
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RCX = 000000006abff040 RDX = 000000012d800000<br>
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RSP = 00000000a3fefe58 RBP = 00000000d983ad10<br>
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RSI = 0000000544681000 RDI = 0000000416e81000<br>
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R8 = 00000000d983aee0 R9 = 0000000000000000<br>
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R10 = 00000004ec680040 R11 = 0000000000000000<br>
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R12 = 0000000000000000 R13 = fffffffffffffffc<br>
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R14 = 0000000000000000 R15 = 0000000000000001<br>
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RIP = 000007fef7a2c387 EFL = 00010203<br>
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CS = 0033 FS = 0053 GS = 002b<br>
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Stack Trace (from fault):<br>
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[ 0] 0x000007fef7a2c387 C:\Windows\system32\VCRUNTIME140.dll+0005<br>
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0055 memmove+00000087<br>
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[ 1] 0x000007fee22084fe C:\Users\verasonics\AppData\Local\FLIMfit_5.0.3_PCWIN64<br>
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_MCR_cache\mcrCache9.1\FLIMfi0\Users\CIMLab\jenkins-slave\workspace\flimfit-rele<br>
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ase-win\FLIMfitLibrary\Libraries\FLIMGlobalAnalysis_64.dll+00099582 FLIMGlobalCl<br>
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earFit+00088526<br>
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[ 2] 0x000007fee2206463 C:\Users\verasonics\AppData\Local\FLIMfit_5.0.3_PCWIN64<br>
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_MCR_cache\mcrCache9.1\FLIMfi0\Users\CIMLab\jenkins-slave\workspace\flimfit-rele<br>
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ase-win\FLIMfitLibrary\Libraries\FLIMGlobalAnalysis_64.dll+00091235 FLIMGlobalCl<br>
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earFit+00080179<br>
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[ 3] 0x000007fee22226bd C:\Users\verasonics\AppData\Local\FLIMfit_5.0.3_PCWIN64<br>
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_MCR_cache\mcrCache9.1\FLIMfi0\Users\CIMLab\jenkins-slave\workspace\flimfit-rele<br>
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ase-win\FLIMfitLibrary\Libraries\FLIMGlobalAnalysis_64.dll+00206525 FLIMGlobalCl<br>
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earFit+00195469<br>
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[ 4] 0x000007fef797beed C:\Windows\system32\ucrtbase.DLL+0044<br>
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2093 crt_at_quick_exit+00000125<br>
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[ 5] 0x00000000779859cd C:\Windows\system32\kernel32.dll+0008<br>
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8525 BaseThreadInitThunk+00000013<br>
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[ 6] 0x0000000077aba561 C:\Windows\SYSTEM32\ntdll.dll+0017<br>
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3409 RtlUserThreadStart+00000033<br>
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If this problem is reproducible, please submit a Service Request via:<br>
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http://www.mathworks.com/support/contact_us/<br>
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<br>
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A technical support engineer might contact you with further information.<br>
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<br>
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Thank you for your help.** This crash report has been saved to disk as C:\Users\<br>
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VERASO~1\AppData\Local\Temp\matlab_crash_dump.7028-1 **<br>
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<br>
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MATLAB is exiting because of fatal error<br>
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Press any key to continue . . .<br>
<br>
<br>
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<a href="http://curie.fr/fr/003614">http://www.unejonquillepourcurie.fr</a><br>
<br>
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<b><font color="#800080">-- </font></b><b><font color="#800080">María</font></b><b><font color="#800080"> Elena
</font></b><b><font color="#800080">Fernández</font></b><b><font color="#800080">
</font></b><b><font color="#800080">Sánchez</font></b><br>
</div>
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<b><font color="#800080">Institut</font></b><b><font color="#800080"> Curie - Centre de Recherche</font></b><br>
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<b><font color="#800080">Unité Physicochimie Curie UMR 168</font></b><br>
</div>
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<b><font color="#800080">Équipe Mécanique et génétique du développement embryonnaire et tumoral</font></b><br>
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<b><font color="#800080">11, rue Pierre et Marie Curie</font></b><br>
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<b><font color="#800080">75005 Paris, France.</font></b><br>
<br>
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<b><font color="#800080">tel: 33 (0)1 56 24 64 92 </font></b><br>
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<b><font color="#800080">fax: 33 (0)1 40 51 06 36</font></b><br>
<br>
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<b><font color="#800080">Lab Activity:</font></b><br>
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<b><font color="#800080">http://umr168.curie.fr/en/Farge-group</font></b><br>
<br>
<br>
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