[ome-users] Leica lif file and bio format importer, Bug?

David Gault (Staff) d.gault at dundee.ac.uk
Mon Mar 12 16:34:17 GMT 2018


Hi Pascal,

Thank you for the report, we have seen this issue introduced recently with updates in ImageJ 1.51v, older versions of ImageJ will not display the problem independent of the version of Bio-Formats being used.
We are currently working on an update for the Bio-Formats plugin to resolve the problem and I have opened a Trello card to track this issue https://trello.com/c/fLfam2fx/17-plugin-missing-ok-and-cancel-buttons-on-series-options.

With Thanks,
David Gault

On 12 Mar 2018, at 15:55, Pascal Lorentz <Lorentz.Pascal at GMAIL.COM<mailto:Lorentz.Pascal at GMAIL.COM>> wrote:

Dear all

We are struggling opening Leica lif files. We observed the problem on 3 different systems. Two Macs and one PC.
We are using the latest FIJI installation. ImageJ version 1.51v and Bio Format Importer Plugin 5.8.1 from March 2nd.
When opening the file the bio format reader opens correctly and displays the containing images. I can also select which images I would like to open. But there is no "open" button visible anymore. We only see the "select all" and "deselect all" buttons on the right. The "open" and "cancel" buttons on the left are missing.
Could that be a bug in the latest bio format importer plugin?

If I download FIJI from scratch without doing any updates I can open the files without any problems.

Best regards

Pascal


--
Pascal Lorentz
Head of BioOptics Facility
Department of Biomedicine
University of Basel
Mattenstrasse 28
4058 Basel
Switzerland

Tel: +41 61 207 50 02
Fax: +41 61 207 50 90
Pascal.Lorentz at unibas.ch<mailto:Pascal.Lorentz at unibas.ch>
http://biomedizin.unibas.ch
http://microscopynetwork.unibas.ch

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