[ome-users] Omero web update problem

[Olivier Miquel]

Hi,

We are trying to migrate our omero 5.2.2 server in the newer 5.4.0 version.

The upgrade of the OMERO.server part went fine so far ( from 5.2.2 to 
5.3.5 then 5.3.5 to 5.4.0).
It starts and i can connect using the newer Insight client.

However OMERO.web won't start, even after i disabled all the web apps.

I want to follow this procedure ( server + omero web on same machine ) : 
https://docs.openmicroscopy.org/omero/5.4.0/sysadmins/unix/install-web/walkthrough/omeroweb-install-with-server-debian-ice3.6.html

If someone could give me a clue where to search, it would be nice.

When i try to start OMERO.web it i got this error:

# sudo -u omero OMERO.server/bin/omero web start

Post-processed 'omeroweb.viewer.min.css' as 'omeroweb.viewer.min.css'
Post-processed 'omeroweb.viewer.min.js' as 'omeroweb.viewer.min.js'

0 static files copied to '/home/omero/apps/OMERO/OMERO.server/lib/python/omeroweb/static', 606 unmodified, 2 post-processed.
Clearing expired sessions. This may take some time... [OK]
Starting OMERO.web... Traceback (most recent call last):
   File "OMERO.server/bin/omero", line 125, in <module>
     rv = omero.cli.argv()
   File "/home/omero/apps/OMERO/OMERO.server/lib/python/omero/cli.py", line 1613, in argv
     cli.invoke(args[1:])
   File "/home/omero/apps/OMERO/OMERO.server/lib/python/omero/cli.py", line 1088, in invoke
     stop = self.onecmd(line, previous_args)
   File "/home/omero/apps/OMERO/OMERO.server/lib/python/omero/cli.py", line 1165, in onecmd
     self.execute(line, previous_args)
   File "/home/omero/apps/OMERO/OMERO.server/lib/python/omero/cli.py", line 1247, in execute
     args.func(args)
   File "/home/omero/apps/OMERO/OMERO.server/lib/python/omero/install/windows_warning.py", line 26, in wrapper
     return func(self, *args, **kwargs)
   File "/home/omero/apps/OMERO/OMERO.server/lib/python/omero/plugins/web.py", line 81, in wrapper
     return func(self, *args, **kwargs)
   File "/home/omero/apps/OMERO/OMERO.server/lib/python/omero/plugins/web.py", line 601, in start
     rv = self.ctx.popen(args=runserver, cwd=location)  # popen
   File "/home/omero/apps/OMERO/OMERO.server/lib/python/omero/cli.py", line 1338, in popen
     stdout=stdout, stderr=stderr)
   File "/usr/lib/python2.7/subprocess.py", line 390, in __init__
     errread, errwrite)
   File "/usr/lib/python2.7/subprocess.py", line 1024, in _execute_child
     raise child_exception
*OSError: [Errno 2] No such file or directory***

------------

OUTPUT of omero diagnostics :
================================================================================
OMERO Diagnostics (admin) 5.4.0-ice36-b74
================================================================================
         
Commands:   java -version                  1.8.0     (/usr/bin/java)
Commands:   python -V                      2.7.13    (/usr/bin/python)
Commands:   icegridnode --version          3.6.3     (/usr/bin/icegridnode)
Commands:   icegridadmin --version         3.6.3     (/usr/bin/icegridadmin)
Commands:   psql --version                 9.6.4     (/usr/bin/psql)

Server:     icegridnode                    running
Server:     Blitz-0                        active (pid = 19312, enabled)
Server:     DropBox                        active (pid = 21514, enabled)
Server:     FileServer                     active (pid = 21518, enabled)
Server:     Indexer-0                      active (pid = 19339, enabled)
Server:     MonitorServer                  active (pid = 21517, enabled)
Server:     OMERO.Glacier2                 active (pid = 19343, enabled)
Server:     OMERO.IceStorm                 active (pid = 19345, enabled)
Server:     PixelData-0                    active (pid = 19347, enabled)
Server:     Processor-0                    active (pid = 21521, enabled)
Server:     Tables-0                       active (pid = 21515, enabled)
Server:     TestDropBox                    inactive (enabled)

Log dir:    /home/omero/apps/OMERO/OMERO.server-5.4.0-ice36-b74/var/log exists
Log files:  Blitz-0.log                    2.0 MB        errors=18   warnings=5
Log files:  DropBox.log                    7.0 KB        errors=0    warnings=2
Log files:  FileServer.log                 0.0 KB
Log files:  Indexer-0.log                  9.0 KB
Log files:  MonitorServer.log              4.0 KB
Log files:  OMEROweb.lock                  0.0 KB
Log files:  OMEROweb.log                   1.0 KB        errors=0    warnings=6
Log files:  PixelData-0.log                10.0 KB
Log files:  Processor-0.log                141.0 KB      errors=0    warnings=17
Log files:  Tables-0.log                   5.0 KB        errors=0    warnings=1
Log files:  TestDropBox.log                n/a
Log files:  master.err                     4.0 KB        errors=2    warnings=2
Log files:  master.out                     0.0 KB
Log files:  Total size                     2.42 MB


Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_USERDIR=(unset)
Environment:OMERO_TMPDIR=(unset)
Environment:PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
Environment:PYTHONPATH=(unset)
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)

OMERO SSL port:4064
OMERO TCP port:4063
OMERO data dir:'/home/omero/apps/OMERO/OMERO.data' Exists? True	Is writable? True
OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)

JVM settings: Blitz-${index}                -Xmx13516m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Indexer-${index}              -Xmx3686m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: PixelData-${index}            -Xmx3686m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Repository-${index}           -Xmx3686m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions








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