[ome-users] Bioformats import

[David Gault (Staff)]

Hi David,

This could be the case if Bio-Formats was expecting from the available metadata a stack of 500 images. A couple of questions which might help us understand if this the case:
- What format was the dataset saved as?
- It sounds as though the original Multi-D value of 500 is saved and being read in the metadata. Do you know if the true number of acquired images is recorded in the metadata?

With Thanks,
David Gault

> On 27 Mar 2017, at 15:44, Knecht, David <david.knecht at UCONN.EDU> wrote:
>
> I tried to import a multi-position Micro-manager data set into Fiji with the latest Bioformats.  The data was collected with Multi-D set to 500 images saving individual images to a folder. I stopped the acquisition after 340 images.  If I File/Import Image sequence and point to one of the positions, it opens a stack of 340 images.  If I use Bioformats and open the images in the same folder, it opens a stack with 500 images, the last 160 of which are blank.  Dave
>
> Dr. David Knecht
> Professor , Department of Molecular and Cell Biology
> University of Connecticut
> 91 N. Eagleville Rd.
> U-3125
> Storrs, CT 06269-3125
> 860-486-2200
>
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