[ome-users] Can I use Bio-Formats read .CZI file

[Qi Gong]

Hello everyone,

Sorry for bother. I want to know could I use Bio-Formats read .czi format
WSI image in matlab? I could read in .svs and .ndpi formats now. When I
used same code to read in .czi file, matlab gave me error. Thank you very
much.

>> WSI_data = bfGetReader('C:\000_whole_slides\WSIcziexample.czi');

Warning: *** Insufficient memory detected. ***
*** 352m found ***
*** 512m or greater is recommended ***
*** See http://www.mathworks.com/matlabcentral/answers/92813 ***
*** for instructions on increasing memory allocation. ***

> In bfCheckJavaMemory (line 53)
  In bfGetReader (line 47)
Error using bfGetReader (line 85)
Java exception occurred:
loci.formats.UnsupportedCompressionException: JPEG-XR not yet supported

at
loci.formats.in.ZeissCZIReader$SubBlock.readPixelData(ZeissCZIReader.java:2936)

at
loci.formats.in.ZeissCZIReader$SubBlock.readPixelData(ZeissCZIReader.java:2908)

at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:557)

at loci.formats.FormatReader.setId(FormatReader.java:1426)

at loci.formats.ImageReader.setId(ImageReader.java:835)

at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:651)

at loci.formats.ChannelFiller.setId(ChannelFiller.java:223)

at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:651)

at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:289)

Regards,
Qi

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